TABLE 2.
Differentially expressed genes under bile exposure in L. monocytogenes 10403S wild type.
| LMRG Locus tag | lmo Locus tag | Gene name | Operon | Annotation | FC | Adjusted p-value |
| LMRG_00151 | LMRG_02887, LMRG_00151- LMRG_00152 | Hypothetical protein | 3.08 | 0.00 | ||
| LMRG_00152 | Hypothetical protein | 2.39 | 0.01 | |||
| LMRG_00222 | lmo0540 | Penicillin-binding protein | 2.04 | 0.00 | ||
| LMRG_00293 | lmo0610 | Internalin-like protein | 2.4 | 0.00 | ||
| LMRG_00311 | lmo0628 | LMRG_00311-LMRG_00312 | Hypothetical protein | 4.56 | 0.00 | |
| LMRG_00334 | lmo0647 | Hypothetical protein | 2.83 | 0.00 | ||
| LMRG_00341 | lmo0654 | LMRG_00341-LMRG_00342 | Hypothetical protein | 3.11 | 0.00 | |
| LMRG_00404 | lmo0715 | LMRG_00402-LMRG_00407 | Hypothetical protein | 2.02 | 0.00 | |
| LMRG_00482 | lmo0794 | Putative Rrf2-linked NADH-flavin reductase | 2.41 | 0.00 | ||
| LMRG_00529 | lmo1067 | GTP-binding protein TypA/BipA | 2.23 | 0.00 | ||
| LMRG_00530 | lmo1068 | Fomain-containing protein | 2.05 | 0.01 | ||
| LMRG_00706 | lmo1257 | Hypothetical protein | 2.53 | 0.00 | ||
| LMRG_00826 | lmo1375 | Peptidase M20 | 2.07 | 0.00 | ||
| LMRG_00942 | lmo1489 | LMRG_00945-LMRG_00939 | RNA binding protein | 2.22 | 0.00 | |
| LMRG_01131 | lmo1983 | ilvD | ilv-leu | Dihydroxy-acid dehydratase | 2.62 | 0.01 |
| LMRG_01132 | lmo1984 | ilvB | Acetolactate synthase large subunit | 3.12 | 0.00 | |
| LMRG_01134 | lmo1986 | ilvC | Ketol-acid reductoisomerase | 2.91 | 0.00 | |
| LMRG_01453 | lmo1517 | LMRG_01454-LMRG_01453 | Nitrogen regulatory protein P-II | 2.07 | 0.02 | |
| LMRG_01561 | lmo2269 | Hypothetical protein; | 6.18 | 0.00 | ||
| LMRG_01602 | lmo2230 | arsC | Ars | Arsenate reductase | 2.56 | 0.01 |
| LMRG_01609 | lmo2223 | Putative transcriptional regulator | 2.09 | 0.04 | ||
| LMRG_01622 | lmo2210 | Hypothetical protein | 18.59 | 0.00 | ||
| LMRG_01630 | lmo2202 | fabH | LMRG_01630-LMRG_01631 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII | 2.05 | 0.00 |
| LMRG_01761 | lmo2487 | Hypothetical protein | 2.14 | 0.00 | ||
| LMRG_01976 | lmo2720 | Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, YtcI homolog | 4.32 | 0.00 | ||
| LMRG_02011 | lmo0911 | Hypothetical protein | 2.43 | 0.00 | ||
| LMRG_02071 | lmo0972 | dltC | dltABCD, LMRG_02074 | D-alanyl carrier protein | 2.04 | 0.00 |
| LMRG_02074 | Teichoic acid D-Ala incorporation-associated protein DltX | 2.28 | 0.01 | |||
| LMRG_02191 | lmo2646 | LMRG_02193-LMRG_02190 | Hypothetical protein | 2.51 | 0.03 | |
| LMRG_02218 | lmo2673 | uspA2 | uspA2-rpiB | Universal stress protein UspA | 2.37 | 0.02 |
| LMRG_02232 | lmo2686 | Hypothetical protein | 2.23 | 0.00 | ||
| LMRG_02304 | lmo0880 | Putative peptidoglycan bound protein (LPXTG motif) | 4.47 | 0.00 | ||
| LMRG_02364 | lmo0115 | lmaD | lmaDCBA | Listeria protein LmaD, associated with virulence | 3.79 | 0.00 |
| LMRG_02365 | lmo0116 | lmaC | LmaC, associated with virulence in Listeria | 3.34 | 0.00 | |
| LMRG_02366 | lmo0117 | lmaB | Listeria protein LmaB, associated with virulence | 2.04 | 0.02 | |
| LMRG_02372 | lmo0123 | LMRG_02369-LMRG_02378 | Putative tail or base plate protein gp18 [Bacteriophage A118] | 2.1 | 0.04 | |
| LMRG_02423 | lmo2852 | ASCH domain-containing protein | 2.02 | 0.02 | ||
| LMRG_02427 | lmo2856 | rpmH | 50S ribosomal protein L34 | 2.06 | 0.00 | |
| LMRG_02611 | lmo0265 | dapE | Succinyl-diaminopimelate desuccinylase | 2.87 | 0.00 | |
| LMRG_02646 | lmo0263 | inlC2, inlH | Internalin C2 | 2.22 | 0.04 | |
| LMRG_02700 | lmo2568 | LMRG_02700-LMRG_02701 | Hypothetical protein | 9.41 | 0.00 | |
| LMRG_02768 | lmo1694 | CDP-abequose synthase, Putative sugar nucleotide epimerase | 3.68 | 0.00 | ||
| LMRG_02808 | lmo2132 | Cyclic nucleotide-binding protein | 2.52 | 0.00 | ||
| LMRG_00273 | lmo0591 | LMRG_00271-LMRG_00273 | Hypothetical protein | −2.12 | 0.01 | |
| LMRG_00501 | lmo1040 | LMRG_00501-LMRG_00499 | molybdenum ABC transporter permease | −2.57 | 0.04 | |
| LMRG_00852 | lmo1400 | LMRG_00852-LMRG_00854 | Phosphinothricin N-acetyltransferase | −2.20 | 0.00 | |
| LMRG_00877 | lmo1425 | opuCD | opuC | Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD, subunit of predicted ATP-driven transporter complex of CARNITINE/choline | −2.29 | 0.00 |
| LMRG_00880 | lmo1428 | opuCA | Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA, subunit of predicted ATP-driven transporter complex of CARNITINE/choline | −2.05 | 0.00 | |
| LMRG_00926 | lmo1473 | dnaK | hrcA-grpE-dnaK-dnaJ | Chaperone protein, DnaK | −2.39 | 0.00 |
| LMRG_01023 | lmo1877 | fhs | Formate–tetrahydrofolate ligase | −2.55 | 0.00 | |
| LMRG_01218 | lmo2068 | groL | groSL | Heat shock protein 60 family chaperone GroEL | −3.20 | 0.00 |
| LMRG_01219 | lmo2069 | groS | Heat shock protein 60 family co-chaperone GroES | −2.58 | 0.00 | |
| LMRG_01286 | lmo1681 | LMRG_01286-LMRG_01288 | 5-methyltetrahydropteroyltriglutamate–homocysteine methyltransferase | −2.03 | 0.03 | |
| LMRG_01399 | lmo1568 | LMRG_01399-LMRG_01401 | Membrane protein | −2.46 | 0.00 | |
| LMRG_01585 | lmo2247 | LMRG_01585-LMRG_01587 | Xidoreductase of aldo/keto reductase family, subgroup 2, glyoxal reductase | −2.09 | 0.01 | |
| LMRG_01842 | lmo2406 | Hypothetical protein | −2.38 | 0.00 | ||
| LMRG_02144 | lmo2600 | LMRG_02142-LMRG_02144 | ATPase component of general energizing module of ECF transporters | −2.40 | 0.00 | |
| LMRG_02241 | lmo2694 | Arginine decarboxylase/Lysine decarboxylase | −2.14 | 0.00 | ||
| LMRG_02276 | lmo0853 | LMRG_02275-LMRG_02277 | QacE family quaternary ammonium compound efflux SMR transporter | −3.22 | 0.02 | |
| LMRG_02326 | lmo0075 | LMRG_02326-LMRG_02327 | Phosphonomutase, probable carboxyvinyl-carboxyphosphonate phosphorylmutase | −2.03 | 0.04 | |
| LMRG_02358 | lmo0109 | LMRG_02358-LMRG_02359 | AraC family transcriptional regulator | −2.18 | 0.00 | |
| LMRG_02386 | lmo0137 | LMRG_02385-LMRG_02386 | Oligopeptide ABC transporter, permease protein | −2.29 | 0.03 | |
| LMRG_02496 | lmo1775 | purE | LMRG_02496-LMRG_02507 | Phosphoribosylaminoimidazole carboxylase catalytic subunit, 5-(carboxyamino)imidazole ribonucleotide mutase | −3.30 | 0.00 |
| LMRG_02510 | lmo1761 | Sodium-dependent transporter | −2.78 | 0.00 | ||
| LMRG_02622 | lmo0200 | prfA | prfA-plcA | Listeriolysin regulatory protein, PrfA | −2.14 | 0.00 |
| LMRG_02716 | lmo2371 | LMRG_02716-LMRG_02717 | ABC transporter, permease protein | −2.59 | 0.00 |