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. 2019 Sep 10;9:12949. doi: 10.1038/s41598-019-49098-w

Table 1.

List of the 31 strains collected from the database of essential genes (DEG) used for training data and 5 strains collected from the literature used for validation.

No Organism KEGG abbreviation EG number Condition Reference
Training datasets
1 Acinetobacter baumannii ATCC 17978 acb 458 Rich medium 35
2 Acinetobacter baylyi ADP1 aci 499 Rich medium 36
3 Agrobacterium fabrum str. C58 atu 361 Rich medium 37
4 Bacillus subtilis 168 bsu 271 Rich medium 1
5 Bacteroides fragilis 638 R bfg 547 Rich medium. 38
6 Brevundimonas subvibrioides ATCC 15264 bsb 412 Rich medium 37
7 Burkholderia pseudomallei K96243 bps 505 Rich medium 39
8 Burkholderia thailandensis E264 bte 406 Rich medium. 40
9 Campylobacter jejuni NCTC 11168 = ATCC 700819 cje 228 Rich medium 41
10 Caulobacter crescentus ccr 480 Rich medium 42
11 Escherichia coli MG1655 II eco 296 Rich medium 22
12 Francisella novicida U112 ftn 392 Rich medium 43
13 Haemophilus influenzae Rd KW20 hin 642 Rich medium 44
14 Helicobacter pylori 26695 hpy 323 Rich medium 45
15 Mycobacterium tuberculosis H37Rv III mtu 687 Rich medium 46
16 Mycoplasma genitalium G37 mge 381 Rich medium 7
17 Mycoplasma pulmonis UAB CTIP mpu 310 Rich medium 47
18 Porphyromonas gingivalis ATCC 33277 pgn 463 Rich medium 48
19 Pseudomonas aeruginosa PAO1 pae 336 Rich medium 49
20 CGA009 rpa 522 Rich medium 50
21 Salmonella enterica serovar Typhi Ty2 stt 358 Rich medium 51
22 Salmonella enterica serovar Typhimurium SL1344 sey 353 Rich medium 51
23 Salmonella typhimurium LT2 stm 230 Rich medium 52
24 Shewanella oneidensis MR-1 son 403 Rich medium 53
25 Sphingomonas wittichii RW1 swi 535 Rich medium 54
26 Staphylococcus aureus NCTC 8325 sao 351 Rich medium 55
27 Streptococcus agalactiae A909 sak 317 Rich medium 56
28 Streptococcus pyogenes NZ131 soz 241 Todd-Hewitt medium 57
29 Streptococcus sanguinis SK36 ssa 218 Rich medium 8
30 Synechococcus elongatus PCC 7942 syf 682 Rich medium 58
31 Vibrio cholerae N16961 vch 779 Rich medium 59
Validation datasets
1 Campylobacter jejuni NCTC 11168 cje 166 Rich medium 12
2 Mycobacterium tuberculosis H37Rv mtu 461 Rich medium 11
3 Burkholderia cenocepacia H111 bceo 398 Rich medium 60
4 Herbaspirillum seropedicae SmR1 hse 397 Rich medium 61
5 Bacillus subtilis 168 bsu 257 Rich medium 13