Table 1.
Type | Raw reads | Clean reads | Mapped reads | rRNA | snRNA | snoRNA | tRNA | Unique reads |
Unique reads mapped |
---|---|---|---|---|---|---|---|---|---|
Leaf_1 | 23,609,453 | 22526694 (100%) | 20300798 (90.12%) | 2643342 (11.74%) | 8960 (0.04%) | 3684 (0.02%) | 485426 (2.15%) | 9355147 (100%) | 7915731 (84.61%) |
Leaf_2 | 23,497,910 | 22543808 (100%) | 20548305 (91.15%) | 2591106 (11.49%) | 6251 (0.03%) | 1931 (0.01%) | 425319 (1.89%) | 8201915 (100%) | 6935745 (84.56%) |
Leaf_3 | 21,410,747 | 20444752 (100%) | 18127870 (88.67%) | 1290962 (6.31%) | 3670 (0.02%) | 936 (0.005%) | 408480 (2%) | 8877395 (100%) | 7377298 (83.10%) |
Leaf_4 | 25,877,348 | 24857227 (100%) | 21830151 (87.82%) | 1570443 (6.32%) | 16601 (0.07%) | 3007 (0.01%) | 768556 (3.09%) | 10199606 (100%) | 8090818 (79.32%) |
Total | 94,395,458 | 90,372,481 (100%) |
80,807,124 | 8,095,853 | 35,482 | 9,558 | 2,087,781 | 36,634,063 | 30,319,592 |