Table 3.
Top 10 differentially methylation regions for 9-month control vs. pooled sequential/simultaneous
Region coordinates | Genes in region | Gene function [42] | # CpGs | FDR | Stouffer | β (max) | β (mean) |
---|---|---|---|---|---|---|---|
chr8:51306070–51306693 | SNTG1 | Mediates dystrophin binding. Associated with idiopathic scoliosis [49]. | 3 | 2.49E− 09 | 0.0904 | 0.2066 | 0.1012 |
chr3:150265617–150265620 | SERP1 | Protein folding and metabolism. Inhibition can downregulate the Wnt/β-catenin pathway in keratinocytes [70]. | 2 | 4.96E− 06 | 0.1754 | 0.0351 | 0.0327 |
chr3:44636619–44636844 | ZNF197 | Transcription factor with potential role in skeletal muscle energy metabolism following exercise [71]. | 2 | 0.0008 | 0.3556 | 0.0465 | 0.0267 |
chr22:49875144–49875295 | C22orf34 | Chromosome 22 Open Reading Frame 34, uncharacterized protein. | 2 | 0.0040 | 0.3980 | − 0.0775 | − 0.0575 |
chr16:1477870–1478718 | C16orf91 | Chromosome 16 Open Reading Frame 91, uncharacterized protein. | 3 | 0.0001 | 0.4290 | − 0.0667 | − 0.0434 |
chr19:7813422–7813963 | EXOSC3P2 | Pseudogene, unknown function. | 3 | 3.81E− 06 | 0.4426 | − 0.0800 | − 0.0468 |
chr13:101173617–101174420 | PCCA | Subunit of mitochondrial enzyme critical to energy metabolism [72]. | 8 | 4.01E− 11 | 0.4572 | − 0.0929 | − 0.0537 |
chr11:1903176–1903333 | LSP1 | Expressed in immune system cells and may regulate motility and transendothelial migration. Potential marker of hepatocellular carcinoma risk [73]. | 2 | 0.0047 | 0.4611 | − 0.0586 | − 0.0486 |
chr4:185369135–185370076 | IRF2 | Competitively inhibits the IRF1-mediated transcriptional activation of interferons alpha and beta. Decreased expression associated with angiogenesis and inflammation [43, 44]. | 3 | 0.0030 | 0.4752 | − 0.1271 | − 0.0100 |
chr4:175241684–175241753 | CEP44 | Centrosomal protein | 2 | 0.0071 | 0.4980 | − 0.1368 | − 0.0847 |
chr17:72915897–72916509 | USH1G | Auditory and visual function development [50]. | 3 | 0.0009 | 0.5005 | − 0.0636 | − 0.0595 |