Table 3.
Candidate genes belong to categories related to salt tolerance
| Category | Gene ID | Gene Name | Description | TF Family/Stress/Signal/Ion transport |
|---|---|---|---|---|
| Transcription factors | Gh_A01G1562 | COL16 | Zinc finger protein CONSTANS-LIKE 16 | CO-like |
| Gh_A01G1564 | MYB108 | Transcription factor MYB108 | MYB | |
| Gh_A03G1731 | BZIP53 | bZIP transcription factor 53 | bZIP | |
| Gh_A03G1738 | BLH6 | BEL1-like homeodomain protein 6 | TALE | |
| Gh_A12G0867 | SPL8 | Squamosa promoter-binding-like protein 8 | SBP | |
| Gh_A12G0870 | ERF034 | Ethylene-responsive transcription factor ERF034 | ERF | |
| Gh_A12G0871 | HAT3 | Homeobox-leucine zipper protein HAT3 | HD-ZIP | |
| Gh_A12G0875 | ERF13 | Ethylene-responsive transcription factor 13 | ERF | |
| Gh_A12G0876 | ERF13 | Ethylene-responsive transcription factor 13 | ERF | |
| Gh_A12G0877 | ERF2 | Ethylene-responsive transcription factor 2 | ERF | |
| Gh_D07G0251 | ARR12 | Two-component response regulator ARR12 | ARR-B | |
| Response to stress or defense response | Gh_A01G1563 | CUT1 | 3-ketoacyl-CoA synthase 6 | Cold |
| Gh_A03G1732 | AT2G16385 | CIF1:Proteincasparlan strip integrity factor 1 | Acidic pH | |
| Gh_A03G1733 | AT4G39130 | Late embryogenesis abundant protein | Stress, Water | |
| Gh_A07G0622 | CLPB1 | Chaperone protein ClpB1 | Heat, Hydrogen peroxide | |
| Gh_A07G0624 | DGK1 | Diacylglycerol kinase 1 | Defense response | |
| Gh_A12G0875 | ERF13 | Ethylene-responsive transcription factor 13 | Defense response | |
| Gh_A12G0876 | ERF13 | Ethylene-responsive transcription factor 13 | Defense response | |
| Gh_A12G0877 | ERF2 | Ethylene-responsive transcription factor 2 | Defense response | |
| Gh_D07G0240 | KAT3 | Potassium channel KAT3 | Nematode | |
| Gh_D07G0244 | EDR2L | Protein enhanced disease resistance 2-like | Defense response | |
| Gh_D07G0246 | CHIA | Acidic mammalian chitinase | Immune system process | |
| Gh_D07G0248 | CHIT1 | Chitotriosidase-1 | Immune response | |
| Gh_D07G0249 | CHIT1 | Chitotriosidase-1 | Immune response | |
| Gh_D07G0251 | ARR12 | Two-component response regulator ARR12 | Water deprivation | |
| Gh_D07G0252 | NKS1 | Ubiquitin-associated protein (DUF1068) | Hyperosmotic salinity | |
| Gh_D07G0256 | TIL | Temperature-induced lipocalin-1 | Hyperosmotic salinity, Cold, Freezing, Heat, Paraquat, Water deprivation | |
| Gh_D07G0500 | HVA22E | HVA22-like protein e | Hyperosmotic salinity, Cold, Water deprivation | |
| Signaling or response to signal factors | Gh_A01G1564 | MYB108 | Transcription factor MYB108 | Gibberellic acid, Jasmonic acid |
| Gh_A02G1099 | WAK2 | Wall-associated receptor kinase 2 | Salicylic acid | |
| Gh_A02G1100 | WAK2 | Wall-associated receptor kinase 2 | Salicylic acid | |
| Gh_A07G0624 | DGK1 | Diacylglycerol kinase 1 | Intracellular signal transduction | |
| Gh_A07G0729 | RALFL27 | Protein RALF-like 27 | Calcium mediated signaling, Cell-cell signaling | |
| Gh_D07G0251 | ARR12 | Two-component response regulator ARR12 | Cytokinin | |
| Gh_D07G0256 | TIL | Temperature-induced lipocalin-1 | Cytokinin | |
| Gh_D07G0500 | HVA22E | HVA22-like protein e | Abscisic acid | |
| Gh_D10G0643 | IAA27 | Auxin-responsive protein IAA27 | Auxin | |
| Ion homeostasis or ion transport | Gh_A03G1732 | AT2G16385 | CIF1:Proteincasparlan strip integrity factor 1 | Ion homeostasis |
| Gh_D07G0240 | KAT3 | Potassium channel KAT3 | Potassium ion transmembrane transport, Regulation of ion transmembrane transport, Regulation of membrane potential | |
| Gh_D07G0252 | NKS1 | Ubiquitin-associated protein (DUF1068) | Vacuolar sequestering of sodium ion | |
| Gh_D07G0254 | MOT1 | Molybdate transporter 1 | Molybdate ion transmembrane transporter activity, Molybdate ion transport | |
| Gh_D07G0255 | MOT1 | Molybdate transporter 1 | Molybdate ion transmembrane transporter activity, Molybdate ion transport | |
| Gh_D07G0256 | TIL | Temperature-induced lipocalin-1 | Cellular chloride ion homeostasis, Cellular sodium ion homeostasis | |
| Fatty acid | Gh_A01G1563 | CUT1 | 3-ketoacyl-CoA synthase 6 | Fatty acid biosynthetic process |
| Amino acid | Gh_D07G0242 | PROC | Pyrroline-5-carboxylate reductase | Proline biosynthetic process, Pyrroline-5-carboxylate reductase activity |
| Gh_A03G1734 | HISN7 | Bifunctional phosphatase IMPL2, chloroplastic | Histidine biosynthetic process, Inositol biosynthetic process, Phosphatidylinositol phosphorylation | |
| Gh_A03G1737 | SAE2 | SUMO-activating enzyme subunit 2 | Acid-amino acid ligase activity | |
| Gh_D08G0928 | GDU2 | Protein GLUTAMINE DUMPER 2 | Amino acid transport | |
| Gh_D08G0929 | GDU3 | Protein GLUTAMINE DUMPER 3 | Amino acid transport |