Table 5.
The differential expression of the putative genes detected in both GWAS and transcriptome sequencing
| Gene_id | readcount_H3 | readcount_S3 | log2FoldChange | p value | readcount_H24 | readcount_S24 | log2FoldChange | p value | readcount_H72 | readcount_S72 | log2FoldChange | p value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gh_A01G1563 | 40.232 | 78.450 | 0.963 | 0.261 | 4.001 | 51.024 | 3.673 | 0.000* | 0.000 | 5.109 | +∞ | 0.316 |
| Gh_A02G1100 | 4.161 | 26.612 | 2.677 | 0.001* | 2.994 | 2.954 | −0.020 | 1.000 | 5.117 | 1.099 | −2.219 | 0.297 |
| Gh_A03G1740 | 587.138 | 96.274 | −2.608 | 0.000* | 322.348 | 67.547 | −2.255 | 0.000* | 38.368 | 24.008 | −0.676 | 0.246 |
| Gh_A07G0622 | 180.915 | 912.736 | 2.335 | 0.000* | 185.769 | 1681.857 | 3.178 | 0.000* | 130.525 | 1972.522 | 3.918 | 0.000* |
| Gh_A07G0623 | 24.501 | 51.165 | 1.062 | 0.036 | 48.834 | 79.571 | 0.704 | 0.403 | 32.992 | 79.503 | 1.269 | 0.004* |
| Gh_A12G0877 | 10.051 | 4.262 | −1.238 | 0.306 | 27.855 | 0.484 | −5.848 | 0.000* | 25.105 | 3.719 | −2.755 | 0.002* |
| Gh_D07G0243 | 63.337 | 213.505 | 1.753 | 0.000* | 115.184 | 114.475 | − 0.009 | 0.990 | 88.638 | 69.300 | −0.355 | 0.441 |
| Gh_D07G0249 | 1.579 | 0.444 | −1.830 | 0.771 | 4.501 | 3.006 | −0.582 | 0.834 | 2.439 | 77.211 | 4.984 | 0.000* |
| Gh_D07G0250 | 3.196 | 39.993 | 3.645 | 0.004* | 0.501 | 4.404 | 3.137 | 0.205 | 7.333 | 4.395 | −0.738 | 0.621 |
| Gh_D07G0251 | 193.354 | 458.100 | 1.244 | 0.019 | 189.755 | 242.694 | 0.355 | 0.564 | 192.524 | 376.097 | 0.966 | 0.002* |
| Gh_D07G0258 | 220.517 | 323.412 | 0.552 | 0.060 | 141.005 | 164.415 | 0.222 | 0.586 | 95.896 | 206.969 | 1.110 | 0.002* |
| Gh_D07G0263 | 41.671 | 152.914 | 1.876 | 0.000* | 25.937 | 198.357 | 2.935 | 0.000* | 279.158 | 178.035 | −0.649 | 0.043 |
| Gh_D07G0500 | 37.958 | 426.805 | 3.491 | 0.000* | 37.418 | 163.250 | 2.125 | 0.000* | 262.034 | 249.357 | −0.072 | 0.846 |
*indicate significant at the p < 0.005 level