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. 2019 Sep 4;10:2019. doi: 10.3389/fmicb.2019.02019

FIGURE 2.

FIGURE 2

Phylogeny of W. ichthyophaga strains. (A) Overlay of 83 core Benchmarking Universal Single-Copy Ortholoe (BUSCO) gene trees estimated by PhyML 3.1 using the Hasegawa-Kishino-Yano 85 nucleotide substitution model and estimating the alpha parameter of the gamma distribution of the substitution rate categories and the proportion of invariable sites. (B) Majority rule consensus tree of 83 core gene trees described above. (C) Phylogenetic network reconstructed with the Neighbor-Net algorithm based on the dissimilarity distance matrix calculated from the SNP data. (D) Majority rule consensus tree of 690 gene trees of core BUSCOs from 21 genomes of W. ichthyophaga, with W. hederae and W. mellicola used as outgroups. Branches separating individual W. ichthyophaga strains are too short to be seen.