Table 1.
General statistics of L. theobromae LA-SOL3 genome assembly, gene prediction and comparison with the available genome of L. theobromae CSS-01s (MDYX00000000.1).
| Lasiodiplodia theobromae | LA-SOL3 | CSS-01s (MDYX00000000.1) |
|---|---|---|
| Size (Mb) | 43.9 | 43.3 |
| Coverage | 214x | 90x |
| % G + C content | 54.75 | 54.77 |
| % Repeats | 2.21 | 3.02 |
| Number of genes | 12785 | 12902 |
| Average gene length (bp) | 1610 | 1629 |
| % of genome covered by genes | 46.8 | ~48.5 |
| % of genome covered by CDS | 42.7 | 43.6 |
| Gene density (genes/Mb) | 291 | 297 |
| Average exons per mRNA | 2.8 | 2.8 |
| Average exon length (bp) | 510 | 506 |
| Average introns per mRNA | 1.8 | 1.8 |
| Average intron length (bp) | 86 | 88 |
| Average mRNAs per gene | 1 | n.a. |