Antibodies |
|
Caspase 3 |
Abcam |
Cat# ab2302; RRID: AB_302962 |
Histone H2A.X (phospho Ser139) |
Millipore |
Cat# 05-636; RRID:AB_309864
|
53BP1 |
Novusbio |
Cat# NB100-304; RRID:AB_10003037
|
GFP/YFP |
Thermo Fisher Scientific |
Cat# A10262; RRID:AB_2534023
|
Cytokeratin 4 |
Abcam |
Cat# ab9004; RRID:AB_306932
|
alpha-Tubulin |
Cell signaling |
Cat# 2125; RRID:AB_2619646
|
Ki67 |
Abcam |
Cat# ab15580; RRID:AB_443209
|
Histone H3 (phospho Ser10) |
Abcam |
Cat# ab14955; RRID:AB_443110
|
Nrf2 (phospho Ser40) |
Abcam |
Cat# ab76026; RRID:AB_1524049
|
Chk1 |
Santa Cruz |
Cat# sc-8408; RRID:AB_627257
|
Chk1 (phosphor Ser345) |
Cell Signaling |
Cat# 2348; RRID:AB_331212
|
Chk2 |
Cell Signaling |
Cat# 2662; RRID:AB_2080793
|
Chk2 (phospho Thr68) |
Cell Signaling |
Cat# 2661; RRID:AB_331479
|
p53 |
Vector Laboratories |
Cat# VP-P956; RRID: AB_2335917 |
p53 (phospho Ser15) |
Cell signaling |
Cat# 9284; RRID: AB_331464 |
p38 MAPK |
Cell signaling |
Cat# 9212; RRID:AB_330713
|
p38 MAPK (phosphor Thr180/Tyr182) |
Cell signaling |
Cat# 9215; RRID:AB_331762
|
Alexa Fluor 647 Wheat Germ Agglutinin |
Invitrogen |
Cat# W32466
|
Alexa Fluor 647 anti-human/mouse CD49f |
BioLegend |
Cat# 313610; RRID:AB_493637 |
Alexa Fluor 488 Donkey Anti-Chicken |
Jackson ImmunoResearch |
Cat# 703-545-155; RRID:AB_2340375
|
Alexa Fluor 555 Donkey Anti-Mouse |
Thermo Fisher Scientific |
Cat# A-31570; RRID:AB_2536180
|
Alexa Fluor 555 Donkey Anti-Rabitt |
Thermo Fisher Scientific |
Cat# A-31572; RRID:AB_162543
|
Alexa Fluor 647 Donkey Anti-Rabitt |
Thermo Fisher Scientific |
Cat# A-31573; RRID:AB_2536183
|
Alexa Fluor 488 Donkey Anti-Mouse |
Thermo Fisher Scientific |
Cat# A-21202; RRID:AB_141607
|
|
Bacterial and Virus Strains |
|
Adeno-CMV-iCre |
Vector Laboratories |
Cat# 1045 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
β-Napthoflavone |
MP Biomedicals |
Cat# 156738 |
Tamoxifen |
Sigma Aldrich |
Cat# N3633 |
Fish Skin gelatin |
Sigma Aldrich |
Cat# G7765 |
Bovine Serum Albumin |
Merk Millipore |
Cat# 126575 |
Donkey serum |
Sigma Aldrich |
Cat# D9633 |
N-Ethylmaleimide |
Sigma Aldrich |
Cat# 04259-5G |
Sodium Hidroxide |
VWR |
Cat# 191373M |
N-Acetyl L-Cysteine |
LKT Labs |
Cat# A0918 |
Hydrogen Peroxide 30% |
Merk Millipore |
Cat# 107298 |
DMEM |
Thermo Fisher Scientific |
Cat# 11971025 |
DMEM/F-12 |
Thermo Fisher Scientific |
Cat# 31330 |
HBSS |
GIBCO |
Cat#14175-053 |
Insulin |
Sigma Aldrich |
Cat# I5500 |
Adenine |
Sigma Aldrich |
Cat# A3159 |
Hydrocortisone |
Calbiochem |
Cat# 386698 |
Cholera toxin |
Sigma-Aldrich |
Cat# C8052 |
Epidermal growth factor |
PeproTech |
Cat# 100-15 |
Apo-Transferrine |
Sigma-Aldrich |
Cat# T2036 |
Fetal calf serum |
PAA Laboratories |
Cat# A15-041 |
Penicillin-Streptomycin |
Sigma Aldrich |
Cat# P0781 |
Amphotericin B |
Sigma Aldrich |
Cat# A2942 |
Protease and Phosphatase inhibitor |
Thermo Fisher Scientific |
Cat# 78415 |
40, 6-diamidino-2-phenylindole (DAPI) |
Sigma Aldrich |
Cat# D9542 |
Polybrene |
Sigma Aldrich |
Cat# H9268 |
Trypsin/EDTA |
Sigma Aldrich |
Cat# T4174 |
RIPA buffer |
Thermo Fisher Scientific |
Cat# 89900 |
Pierce BCA Protein Assay Kit |
Thermo Fisher Scientific |
Cat# 23227 |
|
Critical Commercial Assays |
|
Click-iT EdU imaging |
Life technologies |
Cat# C10086
|
RNeasy Mini kit |
QIAGEN |
Cat# 74106 |
Lipofectamine 2000 |
Thermo Fisher |
Cat# 11668-019 |
QuickSTART Bradford Dye reagents |
BioRAD |
Cat# 500-0202 |
Maxi Prep Endotoxin free kit |
QIAGEN |
Cat# 12362 |
Wes Simple |
ProteinSimple |
Cat# P/N 031-108 |
QIAamp DNA Micro Kit |
QIAGEN |
Cat# 56304 |
|
Deposited Data |
|
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_1A; ENA: ERS1432686 |
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_1B; ENA: ERS1432689 |
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_1C; ENA: ERS1432688 |
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_24A; ENA: ERS1432703 |
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_24B; ENA: ERS1432704 |
RNaseq data: p53wt/wt
|
This paper |
Wt_Ctrl_24C; ENA: ERS1432705 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_1A; ENA: ERS1432693 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_1B; ENA: ERS1432694 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_1C; ENA: ERS1432690 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_24A; ENA: ERS1432691 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_24B; ENA: ERS1432692 |
RNaseq data: p53wt/wt
|
This paper |
Wt_50mGy_24C; ENA: ERS1432695 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_1A; ENA: ERS1432636 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_1B; ENA: ERS1432637 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_1C; ENA: ERS1432634 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_24A; ENA: ERS1432638 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_24B; ENA: ERS1432635 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_Ctrl_24C; ENA: ERS1432639 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_1A; ENA: ERS1432640 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_1B; ENA: ERS1432641 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_1C; ENA: ERS1432642 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_24A; ENA: ERS1432643 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_24B; ENA: ERS1432647 |
RNaseq data: p53∗/wt
|
This paper |
p53_mut_50mGy_24C; ENA: ERS1432644 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_1A; ENA: ERS1432706 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_1B; ENA: ERS1432707 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_1C; ENA: ERS1432708 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_24A; ENA: ERS1432709 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_24B; ENA: ERS1432710 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_Ctrl_24C; ENA: ERS1432711 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_1A; ENA: ERS1432712 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_1B; ENA: ERS1432713 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_1C; ENA: ERS1432714 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_24A; ENA: ERS1432715 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_24B; ENA: ERS1432716 |
RNaseq data: Nrf2−/−
|
This paper |
NRF2KO_50mGy_24C; ENA: ERS1432717 |
|
Experimental Models: Cell Lines |
|
Human derived amphotrophic phoenix cell |
ATCC |
ATCC CRL-3213 |
|
Experimental Models: Organisms/Strains |
|
Mouse: C57BL/6J |
The Jackson Laboratory |
JAX: 000664 |
Mouse: Nfe2l2−/−
|
Chan et al., 1996 |
JAX: 017009 |
Mouse: AhcreERTTrp53flR245W/wt
|
Murai et al., 2018 |
N/A |
Mouse: AhcreERTRosa26flYFP/wt
|
Clayton et al., 2007 |
N/A |
|
Recombinant DNA |
|
pLPCX/mito-roGFP2-Grx1 |
Addgene |
#64977 |
|
Software and Algorithms |
|
LAS X |
Leica |
N/A |
Volocity 6 and 6.3 |
Perkin Elmer |
N/A |
Imaris |
Bitplane |
N/A |
GraphPad |
Prism 6 |
N/A |
STAR 2.5.3a |
Dobin et al., 2013 |
N/A |
HTSeq framework version 0.6.1p1 |
Anders et al., 2015 |
N/A |
R package: DESeq2 |
Love et al., 2014 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
R package: pheatmap |
|
https://cran.r-project.org/web/packages/pheatmap/index.html |
R package: RColorBrewer |
|
https://cran.r-project.org/web/packages/RColorBrewer/index.html |
R package: clusterProfiler |
Yu et al., 2012 |
https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html |
R package: org.Mm.eg.db |
|
https://bioconductor.org/packages/release/data/annotation/html/org.Mm.eg.db.html |
MATLAB R2016b |
MathWorks |
N/A |
Jupyter & Spyder 3.1 (Python 3) |
Python Software Foundation |
N/A |
|
Other |
|
Leica TCS SP8 |
Leica |
N/A |
RS225 X-Ray irradiator |
Xstrahl |
RS225 |
Caesium source irradiator |
Gamma-Service medical GmbH |
GSR D1 |
UNIDOS E universal dosimeter |
PTW |
N/A |
UV-irradiator CL-508M |
Uvitec |
N/A |