Table 1.

Top 20 Best Ranked Genes for Species Assignation in the Genus Acinetobacter

	Gene Name	RFD	%ShBip	π	UniProt Annotation
1	NA	176	58.2938	0.2681134	Site-specific recombinase
2	miaA	176	58.2938	0.2180549	tRNA dimethylallyltransferase
3	pbp	180	57.3460	0.2483083	Penicillin-binding protein 1B
4	bamA	182	56.8720	0.2117751	Outer membrane protein assembly factor BamA
5	cbl	188	55.4502	0.2042251	Cys regulon transcriptional regulator Cbl
6	tqsA/AI-2	192	54.5024	0.2645531	AI-2 transport protein TqsA
7	hemA	192	54.5024	0.2266403	Glutamyl-tRNA reductase
8	YidC	188	55.4502	0.1895524	Membrane protein insertase YidC
9	ppsA	188	55.4502	0.1570536	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
10	mfd	194	54.0284	0.2317331	Transcription-repair-coupling factor
11	dxs a	194	54.0284	0.2309427	1-deoxy-d-xylulose-5-phosphate synthase
12	NA	194	54.0284	0.1792528	S1 RNA binding domain protein
13	rlmD	196	53.5545	0.2753780	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
14	gpsA	196	53.5545	0.2131462	Glycerol-3-phosphate dehydrogenase [NAD(P)+]
15	lpxK	200	52.6066	0.3135703	Tetraacyldisaccharide 4′-kinase
16	NA	200	52.6066	0.2376158	Class II glutamine amidotransferase
17	rluD b	200	52.6066	0.2173651	Pseudouridine synthase
18	cdsA	202	52.1327	0.2674116	Phosphatidate cytidylyltransferase
19	rsmH	202	52.1327	0.2234929	Ribosomal RNA small subunit methyltransferase H
20	NA	202	52.1327	0.2165309	Peptidase S49 family protein

^aShared with previously reported phylogenetic markers for Bacteria [26].

^bShared with previously reported phylogenetic markers for the genus Staphylococcus [61].

RFD, Robinson–Fould distance; π, nucleotide diversity; %ShBip, percentage of shared bipartitions with the species tree.