Table 2. Quantification of conformational angles at intra- and inter-dimer tubulin interfaces in published structures.
PDB id | Nucleotide | Interface | Direction of bending (φ), deg | Bend angle (θ), deg | Twist angle (δ), deg | MAPs and ligands in complex | reference |
---|---|---|---|---|---|---|---|
3RYF | GTP | intra | -28.0 | 9.0 | 5.9 | stathmin | [29] |
inter | -32.7 | 9.9 | -8.5 | ||||
3RYI | GDP | intra | -29.9 | 9.6 | 6.1 | stathmin | [29] |
inter | -35.3 | 9.2 | -8.9 | ||||
1SA0 | GDP | intra | -35.9 | 10.1 | 7.0 | Stathmin, colchicine | [30] |
inter | -35.1 | 11.0 | 0.7 | ||||
4DRX | GTP | intra | -27.2 | 10.1 | 5.2 | darpin | [31] |
4FFB | GTP | intra | -38.6 | 11.7 | 7.1 | Stu2 TOG1 | [32] |
4U3J | GTP | intra | -41.4 | 11.5 | 4.3 | Stu2 TOG2 | [33] |
5MIO | GDP | intra | -40.1 | 13.1 | 6.1 | darpin, MCAK, colchicine | [34] |