Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Sep 6;10:2074. doi: 10.3389/fmicb.2019.02074

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2019 Lee, Lee, Jeong, Hwang, Kim, Cho, Palsson and Cho.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

PMC Copyright notice

Identification of a U-rich motif near transcript 3′-end positions (TEPs). (A) Sequence alignment near TEPs or randomly selected intergenic positions. The 41 nt upstream to 20nt downstream sequences of TEPs were used for sequence logo generation using Weblogo. (B) The conserved U-rich motif. (C) Nucleotide enrichment analysis of the two types of TEPs. Nucleotide enrichment was calculated by dividing the frequency of each nucleotide for the TEP sets with the frequency of the same nucleotide of randomly selected intergenic positions. (D) ΔG distribution of TEPs. The ΔG was calculated from upstream 41 nt sequences, including TEPs or randomly selected intergenic positions using RNA fold with the temperature parameter of 30^°C. (E) Structure comparison between U-lacking TEPs, U-rich TEPs and randomly selected intergenic positions.