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. 2019 Sep 13;19:403. doi: 10.1186/s12870-019-1983-8

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 7 — GWAS of F₀ in 232 diverse varieties and LD pattern of the most significant SNP. a Manhattan plot showing the significance of each SNP tested by a mixed linear model. b The most significant SNP is at 2,825,199 bp. The dot color of each SNP represents its LD with the most significant SNP, and the decay of the LD is bordered by two vertical dashed lines. The location of the OsNHX3 gene is marked with a blue bar