Antibodies |
Rabbit polyclonal anti-ChREBP |
Novus Biologicals |
NB400135 lots Q1-Q3 |
Rabbit polyclonal anti-HCF-1 |
Bethyl laboratories |
A301-400A |
Rabbit monoclonal anti-OGT |
Cell Signaling |
24083 |
Rabbit monoclonal anti-PHF2 |
Cell Signaling |
3497S |
Rabbit polyclonal anti-GCK |
Santa Cruz |
sc7908 |
Rabbit monoclonal anti-BAD |
Abcam |
ab32445 |
Rabbit polyclonal anti-phospho BAD (S155) |
Cell Signaling |
9297 |
Mouse monoclonal anti-Actin |
Sigma-Aldrich |
A5316 |
Rabbit IgG Isotype Control |
Invitrogen |
31235 |
Mouse monoclonal anti FLAG M2- Peroxidase |
Sigma-Aldrich |
A8592 |
Mouse Anti-rabbit IgG (Conformation Specific) |
Cell Signaling |
5127S |
Goat anti-rabbit IgG HRP |
Jackson ImmunoResearch Laboratories |
111-035-003 |
Goat anti-mouse IgG HRP |
Jackson ImmunoResearch Laboratories |
115-035-003 |
Bacterial and Virus Strains |
|
|
|
BAD SD Adenovirus |
Gimenez-Cassina et al, 2014 |
PMID: 24506868 |
BAD AAA Adenovirus |
Gimenez-Cassina et al, 2014 |
PMID: 24506868 |
Gk shRNA Adenovirus |
Gift of Dr. Christopher Newgard (Duke University) Bain et al., 2004
|
PMID: 15331526 |
Bad shRNA Adenovirus |
Gimenez-Cassina et al, 2014 |
PMID: 24506868 |
Chrebp shRNA Adenovirus |
Designed from sequence in Dentin et al, 2006
|
PMID: 16873678 |
Ctrl shRNA Adenovirus |
Gimenez-Cassina et al, 2014 |
PMID: 24506868 |
FLAG-ChREBP Adenovirus |
Gift from Dr. Donald Scott (Mount Sinai) (Metukuri et al, 2012) |
PMID: 22586588 |
Biological Samples |
Human Liver Tissues Healthy and NASH Patients |
Liver Tissue Cell Distribution System, Minneapolis, Minnesota |
NIH Contract # HHSN276201200017C |
Chemicals, Peptides, and Recombinant Proteins |
Phosphatase Inhibitor Cocktail 2 aqueous solution |
Sigma-Aldrich |
P5726 |
Protein Phosphatase Inhibitor Cocktail 3 |
Sigma-Aldrich |
P0044 |
Phosstop, Phosphatase Inhibitor |
Sigma-Aldrich |
4906837001 |
Complete™, EDTA-free Protease Inhibitor Cocktail |
Sigma-Aldrich |
11873580001 |
PuGNAC |
Sigma-Aldrich |
A7229 |
Thiamet G |
Sigma-Aldrich |
SML 0244 |
Sodium Orthovanadate |
Sigma-Aldrich |
S6508 |
Western Lightning Plus-ECL |
Thermo Fisher Scientific |
509049325 |
SuperSignal West Femto |
Thermo Fisher Scientific |
PI34095 |
NuPAGE LDS Sample Buffer (4X) |
Life Technologies |
NP0008 |
FLAG Peptide |
Sigma-Aldrich |
F3290 |
UDP-GlcNAC |
Sigma-Aldrich |
|
N-Acetyl-D-glucosamine |
Sigma-Aldrich |
A8625-5G |
Proteinase K |
Life technologies |
25530015 |
CHELEX 100 200-400 MB |
Bio-Rad Laboratories |
1421253 |
Formaldehyde (37% solution) |
Santa Cruz |
sc-203049 |
Collagenase |
Sigma-Aldrich |
C5138 |
Insulin |
Sigma-Aldrich |
I6634 |
Dexamethasone |
Sigma-Aldrich |
D-2915 |
Percoll |
Sigma-Aldrich |
P4937 |
MG132 |
Sigma-Aldrich |
C2211 |
BSA Fraction IV Fatty acid free |
Fischer Scientific |
NC9227912 |
Glucosamine hydrochloride |
Sigma-Aldrich |
G4875 |
Ammonium Formate |
Sigma-Aldrich |
17843 |
Acetonitrile |
Sigma-Aldrich |
AX0145-1 |
HPLC grade water |
Sigma-Aldrich |
WX0008 |
Ammonium Acetate |
Sigma-Aldrich |
5330040050 |
U14C labeled glucose |
American Radiolabled Chemical |
ARC-122 |
Critical Commercial Assays |
Dual luciferase reagent |
Promega |
E1910 |
Targefect hepatocyte |
Targeting systems |
HEP-01 |
Trizol |
Life Technologies |
15596026 |
Syber Green Master Mix |
Life Technologies |
|
Superscript III 1st Strand Synthesis |
Life Technologies |
18080051 |
Lipofectamine RNAiMax |
Life Technologies |
13778150 |
Q5 Site-Directed Mutagenesis Kit |
New England Biolabs |
E0554S |
Gateway™ LR Clonase™ II Enzyme mix |
Thermo Fischer Scientific |
11791100 |
TnT® Coupled Wheat Germ Extract System |
Promega |
L4130 |
Deposited Data |
Unprocessed gel images presented in this manuscript |
http://dx.doi.org/10.17632/by6b3tn4g2.1 |
Experimental Models: Cell Lines |
HEK293T Cells |
ATCC |
CRL-3216 |
Experimental Models: Organisms/Strains |
C57BL/6: WT |
|
|
C57BL/6-KO (BAD) |
Gimenez-cassina et al, 2014 |
PMID: 24506868 |
GKlox/lox |
Gift from Dr. Mark Magnuson (Vanderbilt university): Postic et al, 1999
|
PMID: 9867845 |
C57BL/6-alb-cre mice |
Jackson Laboratory |
003574 |
Oligonucleotides |
Ctrl siRNA: siGenome Non-targeting siRNA #1 |
Dharmacon |
D-001210 |
Hcf1 siRNA-1 sense sequence: GGA GCU UAU AGU GGU GUU U |
Dharmacon |
N/A |
Hcf1 siRNA-2 sense sequence: AGA ACA ACA UUC CGA GGU A |
Dharmacon |
N/A |
Primers for qPCR: See Table S1 for sequence |
IDT |
N/A |
Recombinant DNA |
|
|
|
L-Pk ChORE firefly luciferase reporter |
Gift from Dr. Howard Towle: Lou D-Q et al, 1999
|
PMID: 10497199 |
Acc ChORE firefly luciferase reporter |
Gift from Dr. Howard Towle: O’Callaghan BL et al, 2001
|
PMID: 11340083 |
pCMV-Green Renilla Luciferase control plasmid: |
Thermo Fisher Scientific |
PI16153 |
pCMV10 3X FLAG-ChREBP |
Gift from Dr. Mark Herman (Duke University) |
N/A |
pCMV-SPORT6 HCF-1 Plasmid |
Harvard PlasmID |
MmCD00320375 |
His-OGT WT |
Janetzko et al, 2016 |
PMID: 27618188 |
His-OGT D554N |
Janetzko et al, 2016 |
PMID: 27618188 |
OGT WT |
This Paper |
N/A |
OGT D554N |
This Paper |
N/A |
PCDNA3.1 FLAG-PGC1α |
Gift from Dr. Pere Puigserver: Fan et al, 2004
|
PMID: 14744933 |
pCDNA3.1 |
Invitrogen |
V790-20 |
Software and Algorithms |
ImageJ |
https://imagej.nih.gov/ij/ |
N/A |
Prism |
Graph Pad |
N/A |
SDS 2.4 (for Q-PCR) |
Applied Biosystems |
N/A |
MassHunter Quant |
Agilent Technologies |
N/A |
Sequest |
Thermo Fischer Scientific |
N/A |
Other |
Serum |
Gemini |
100-106 lot A16E00E |
High Carbohydrate Diet (70% sucrose) |
Envigo |
TD.150694 |
WGA Beads |
Vector Laboratories |
AL-1023 |
Anti-FLAG® M2 Magnetic Beads |
Sigma-Aldrich |
M8823 |
Protein G Agarose |
Sigma-Aldrich Aldrich |
11719416001 |
DynaBeads Protein A |
Thermo Fisher Scientific |
10001D |
Amicon Ultra Centrifugal Filters |
Millipore |
UFC500324 |