Table 1.
Melting temperatures and thermodynamic parameters for urea-induced unfolding equilibrium of FXN wild type and variants measured by far-UV CD and fluorescence spectroscopy
Protein Variant |
aTm
(°C) |
b ΔGH2O
(kcal/mol) |
b
m
(kcal/mol•M) |
c [Urea]0.5
(M) |
|||
---|---|---|---|---|---|---|---|
CD ([Θ]222) | Fluorescence ( ) | CD ([Θ]222) | Fluorescence ( ) | CD ([Θ]222) | Fluorescence ( ) | ||
Wild type | 71.0 | 9.23 ± 0.47 | 9.77 ± 0.40 | 1.88 ± 0.10 | 2.00 ± 0.08 | 4.91 | 4.87 |
p.D104G | 74.0 | 9.44 ± 0.46 | 10.39 ± 0.31 | 1.82 ± 0.09 | 1.99 ± 0.06 | 5.20 | 5.22 |
p.A107V | 68.0 | 10.03 ± 0.91 | 9.06 ± 0.22 | 2.13 ± 0.19 | 1.95 ± 0.05 | 4.71 | 4.64 |
p.F109L | 59.6 | 7.14 ± 0.34 | 6.18 ± 0.16 | 2.09 ± 0.10 | 1.85 ± 0.05 | 3.42 | 3.34 |
p.Y123S | 56.6 | 4.31 ± 0.18 | 4.48 ± 0.18 | 1.60 ± 0.06 | 1.59 ± 0.06 | 2.69 | 2.84 |
p.S161I | 60.0 | 5.88 ± 0.58 | 6.95 ± 0.24 | 1.88 ± 0.19 | 2.11 ± 0.07 | 3.12 | 3.30 |
p.S181F | 59.9 | 6.12 ± 0.27 | 6.86 ± 0.33 | 1.84 ± 0.08 | 1.99 ± 0.09 | 3.32 | 3.45 |
p.S202F | 70.7 | 9.07 ±0.32 | 9.60 ±0.33 | 1.89 ± 0.07 | 2.18 ± 0.07 | 4.78 | 4.40 |
Tm values were calculated by taking the first derivative of the ellipticity at 222 nm with respect to temperature, as described in the text. Urea-induced unfolding equilibrium data were obtained by monitoring the ellipticity at 222 nm ([Θ222]) and fluorescence intensity averaged emission wavelength (), as described in Materials and Methods.
ΔGH2O and m values were obtained from Eq (2);
[Urea]0.5 was calculated from Eq (4). Data are reported as the mean ± SE of the fit.