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. Author manuscript; available in PMC: 2020 Sep 1.
Published in final edited form as: Hum Mutat. 2019 Jun 18;40(9):1400–1413. doi: 10.1002/humu.23789

Table 1.

Melting temperatures and thermodynamic parameters for urea-induced unfolding equilibrium of FXN wild type and variants measured by far-UV CD and fluorescence spectroscopy

Protein
Variant
aTm
(°C)
b ΔGH2O
(kcal/mol)
b m
(kcal/mol•M)
c [Urea]0.5
(M)
CD ([Θ]222) Fluorescence ( λ¯) CD ([Θ]222) Fluorescence ( λ¯) CD ([Θ]222) Fluorescence ( λ¯)

Wild type 71.0 9.23 ± 0.47 9.77 ± 0.40 1.88 ± 0.10 2.00 ± 0.08 4.91 4.87
p.D104G 74.0 9.44 ± 0.46 10.39 ± 0.31 1.82 ± 0.09 1.99 ± 0.06 5.20 5.22
p.A107V 68.0 10.03 ± 0.91 9.06 ± 0.22 2.13 ± 0.19 1.95 ± 0.05 4.71 4.64
p.F109L 59.6 7.14 ± 0.34 6.18 ± 0.16 2.09 ± 0.10 1.85 ± 0.05 3.42 3.34
p.Y123S 56.6 4.31 ± 0.18 4.48 ± 0.18 1.60 ± 0.06 1.59 ± 0.06 2.69 2.84
p.S161I 60.0 5.88 ± 0.58 6.95 ± 0.24 1.88 ± 0.19 2.11 ± 0.07 3.12 3.30
p.S181F 59.9 6.12 ± 0.27 6.86 ± 0.33 1.84 ± 0.08 1.99 ± 0.09 3.32 3.45
p.S202F 70.7 9.07 ±0.32 9.60 ±0.33 1.89 ± 0.07 2.18 ± 0.07 4.78 4.40

a

Tm values were calculated by taking the first derivative of the ellipticity at 222 nm with respect to temperature, as described in the text. Urea-induced unfolding equilibrium data were obtained by monitoring the ellipticity at 222 nm ([Θ222]) and fluorescence intensity averaged emission wavelength (λ¯), as described in Materials and Methods.

b

ΔGH2O and m values were obtained from Eq (2);

c

[Urea]0.5 was calculated from Eq (4). Data are reported as the mean ± SE of the fit.