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. 2019 Sep 13;9:13245. doi: 10.1038/s41598-019-49467-5

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Phylogenomic analysis of ST131 strains (without removing recombination). A neighbor joining tree with all SNP positions is shown. Major clades of ST131 are highlighted by colored boxes. The SEA-C2 clone is highlighted in purple. From left to right, bars indicate the new strains contributed by this study (black boxes), the hospital from which the strains in this study were obtained (colored boxes below the “Hospital” label), and the WHO region from which the strain was isolated (if available). The SEA-C2 clone is still monophyletic in this analysis.