The proteasome degradation system. Structured proteins with polyubiquitin tags are degraded by the 26S proteasome in an ATP dependent manner (left). Partially unfolded, intrinsically disordered, and oxidatively damaged proteins are directly degraded by the 26S, free 20S, or 20S capped by non-ATPase caps such as PA28 and PA200, without the need for polyubiquitination (right).