Table 1.
Helper T-Lymphocytes epitopes are given in the table along with their scores predicted by IEDB MHC class II server.
| Protein | S.NO | Allele | Start | End | Peptide sequence | method | Percentile rank |
|---|---|---|---|---|---|---|---|
| GroeL | 1 | HLA-DRB3*01:01 | 336 | 350 | GHSHDVKDRVAQIKT | Consensus (comb.lib./smm/nn) | 0.11 |
| 2 | HLA-DRB3*01:01 | 337 | 351 | HSHDVKDRVAQIKTQ | Consensus (comb.lib./smm/nn) | 0.11 | |
| 3 | HLA-DRB1*03:01 | 186 | 200 | LDVVEGMQFDRGYLS | Consensus (smm/nn/sturniolo) | 0.88 | |
| oipA | 1 | HLA-DRB1*07:01 | 219 | 233 | NLTPFNQVKSRTIFQ | Consensus (comb.lib./smm/nn) | 0.01 |
| 2 | HLA-DRB1*07:01 | 220 | 234 | LTPFNQVKSRTIFQL | Consensus (comb.lib./smm/nn) | 0.01 | |
| 3 | HLA-DRB1*07:01 | 191 | 205 | KASRHVFRKSSGLVI | Consensus (comb.lib./smm/nn) | 0.05 | |
| cagA | 1 | HLA-DRB1*03:01 | 806 | 820 | SRVEQVLADLKNFSK | Consensus (smm/nn/sturniolo) | 0.09 |
| 2 | HLA-DRB1*15:01 | 116 | 130 | KFGDQRYQIFTSWVS | Consensus (smm/nn/sturniolo) | 0.42 | |
| 3 | HLA-DRB1*15:01 | 119 | 133 | DQRYQIFTSWVSHQK | Consensus (smm/nn/sturniolo) | 0.42 | |
| VacA | 1 | HLA-DRB3*02:02 | 1148 | 1162 | FAFFRNALVLKPSVG | NetMHCIIpan | 0.17 |
| 2 | HLA-DRB3*02:02 | 1149 | 1163 | AFFRNALVLKPSVGV | NetMHCIIpan | 0.5 | |
| 3 | HLA-DRB5*01:01 | 153 | 167 | GGDLDVNMQKATLRL | Consensus (smm/nn/sturniolo) | 0.63 |