Table 2.

AUPRs of CNNDLP and other methods on all the diseases and 10 well-characterized diseases.

Disease Name	CNNDLP	Ping’s Method	AUPR LDAP	SIMCLDA	MFLDA	CNNLDA
Prostate cancer	0.538	0.333	0.297	0.176	0.092	0.390
Stomach cancer	0.373	0.364	0.094	0.138	0.008	0.286
Lung cancer	0.666	0.437	0.363	0.131	0.171	0.058
Breast cancer	0.485	0.403	0.396	0.047	0.031	0.964
Reproduce organ cancer	0.498	0.281	0.240	0.130	0.103	0.091
Ovarian cancer	0.552	0.483	0.427	0.027	0.023	0.526
Hematologic cancer	0.667	0.403	0.370	0.216	0.121	0.523
Kidney cancer	0.569	0.663	0.462	0.030	0.034	0.584
Liver cancer	0.630	0.498	0.511	0.140	0.110	0.666
Thoracic cancer	0.399	0.383	0.364	0.155	0.102	0.890
Average AUC of 405 diseases	0.286	0.152	0.127	0.059	0.039	0.251

The bold values indicate the higher AUPRs.