Table 1.
Summary of genes identified in the D. rotundifolia plastome.
| Function | Genes |
|---|---|
| Photosystem I | psaA, psaB, psaC, psaI, psaJ, ycf3i, ycf4 |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ |
| Cytochrome b6/f complex | petA, petBi, petDi, petG, petL, petN, ccsA |
| ATP synthase | atpA, atpB, atpE, atpFi, atpH, atpI |
| RNA polymerase | rpoA, rpoB, rpoC1i, rpoC2 |
| Ribosomal proteins (large subunit) | rpl2, rpl14, rpl16i, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 |
| Ribosomal proteins (small subunit) | rps2, rps3, rps4, rps7, rps8, rps11, rps12i, rps14 (x2), rps15, rps16, rps19 |
| Other protein-coding genes | rbcL, infA, matK, cemA, clpP, accD, ycf68 |
| rRNAs | rrn16, rrn23, rrn4.5, rrn5 |
| tRNAs | trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnH-GUG, trnI-CAU, trnI-GAUi, trnK-UUU, trnL-CAA, trnL-UAAi, trnL-UAG, trnM-CAU (x2), trnfM-CAU, trnN-GUU, trnP-UGG (x2), trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnW-CCA, trnY-GUA |
| Pseudogenes | ψrps18(orf641), ψycf15 |
| Pseudogenes present along with an intact copy | ψinfA, ψpsaB, ψpsaJ, ψpsbI, ψpsbJ, ψrpl2 |
Genes duplicated in inverted repeats were counted once; i denotes intron-containing genes, including trans-spliced rps12.