. 2019 Sep 16;2019:baz094. doi: 10.1093/database/baz094

Table 1.

Comparison of ApicoTFdb transcription factor entries with those of existing databases, DBD and CisBP.

Species	Genome size ( Mb)	Genome version ^*	Total number of proteins	EuPathDB text search	Number of validated and predicted TFs in published databases				ApicoTFdb
						DBD ^$		CisBP ^#
					TF count	TF family	TF count	TF family	ApicoTFdb	TF count	TF family	Experimentally verified	Unannotated proteins
P. falciparum	23.3	2002-10-03	5635	548	18	7	44	10	96	16	27	7
P. berghei	18.5	2017-01-09	5089	418	19	12	46	11	92	18	13	9
P. chabaudi	18.8	2015-06-18	5282	372	19	7	46	11	95	18	13	12
P. knowlesi	24.3	2015-06-18	5261	386	14	8	46	10	79	16	12	5
P. vivax	28.8	2015-06-18	5390	372	15	7	49	8	93	17	12	30
P. yoelii	22.4	2005-09-01	7774	360	15	6	46	9	74	14	10	36
T. gondii ME49	64.5	2015-09-13	8920	443	N.A⁺	N.A⁺	81	14	146	17	1	12
T. gondii p89	64.1	2014-08-13	9874	486	N.A⁺	N.A⁺	N.A⁺	N.A⁺	145	16	0	4
B. bovis	8.1	2010-03-10	3721	126	N.A⁺	N.A⁺	N.A⁺	N.A⁺	33	6	0	11
C. parvum	9.1	2007-02-16	4020	248	30	11	35	8	73	14	1	4
C. cayetanensis	44	2016-09-22	7592	332	N.A⁺	N.A⁺	N.A⁺	N.A⁺	77	14	0	28
N. caninum	57.4	2015-02-21	7266	361	N.A⁺	N.A⁺	84	11	114	16	2	65
E. maxima	49.9	2013-11-05	6249	241	N.A⁺	N.A⁺	N.A⁺	N.A⁺	74	16	0	46
E. tenella	51.8	2013-11-05	8634	307	N.A⁺	N.A⁺	N.A⁺	N.A⁺	101	13	0	53
	Total no of TFs = 1292

^*These are the genome versions available on EuPathDB Release 38.

^$DBD—transcription factor prediction database (Release 2.0).

^#CisBP—Catalog of Inferred Sequence Binding Preferences (last updated: 5 April 2015, Database Build 1.02).

N.A.⁺—no information available.