Fig. 5.

Y-chromosome and mitochondrial lineages identified in ancient and present-day individuals. A) Maximum likelihood Y-chromosome phylogenetic tree estimated with data from 109 high coverage samples. Dashed lines represent the upper bound for the inclusion of 42 low coverage ancient samples in specific Y-chromosome clades on the basis of the lineages identified. B) Maximum likelihood mitochondrial phylogenetic tree estimated with 182 present-day and ancient individuals. The phylogenies displayed were restricted to a subset of clades relevant to the present work. Columns represent archaeological groups analyzed in the present study, ordered by time, and colored areas indicate membership of the major Y-chromosome and mtDNA haplogroups.