Table 1.
Summary of the different datasets, chromosomal distribution and physical map length of SNP markers used in the present study.
| Chromosome | Dataset-1 (unimputed) | Dataset-2 (Imputed) | Dataset-3 | Dataset-4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| No. of SNPs | Proportion of SNPs (%) | Map length (Mb) | Proportion of missing data | No. of SNPs | Proportion of SNPs (%) | Map length (Mb) | No. of SNPs | No. of SNPs | |
| Chr 1 | 36,988 | 15.6% | 301.3 | 6.8% | 36,694 | 15.6% | 301.3 | 3,516 | 133 |
| Chr 2 | 28,793 | 12.1% | 237.0 | 7.0% | 28,567 | 12.2% | 237.0 | 2,604 | 0 |
| Chr 3 | 27,156 | 11.5% | 232.1 | 7.2% | 26,917 | 11.5% | 232.1 | 2,463 | 73 |
| Chr 4 | 22,037 | 9.3% | 241.4 | 7.3% | 21,847 | 9.3% | 241.4 | 2,458 | 75 |
| Chr 5 | 27,767 | 11.7% | 217.7 | 7.3% | 27,483 | 11.7% | 217.7 | 2,413 | 46 |
| Chr 6 | 19,305 | 8.1% | 169.1 | 7.5% | 19,137 | 8.1% | 169.1 | 1,813 | 55 |
| Chr 7 | 20,339 | 8.6% | 176.8 | 7.4% | 20,170 | 8.6% | 176.8 | 1,892 | 318 |
| Chr 8 | 20,730 | 8.7% | 175.7 | 7.3% | 20,566 | 8.8% | 175.7 | 2,006 | 151 |
| Chr 9 | 17,783 | 7.5% | 156.5 | 7.2% | 17,641 | 7.5% | 156.5 | 1,734 | 59 |
| Chr 10 | 16,120 | 6.8% | 150.1 | 7.4% | 15,997 | 6.8% | 150.1 | 1,601 | 34 |
| Total | 237,018 | 100.0% | 2057.6 | — | 235,019 | 100.0% | 2,057.6 | 22,500 | 944 |
| Mean | 23,702 | 10.0% | 205.8 | 7.2% | 23,502 | 10.0% | 205.8 | 2,250 | 94 |