Table 5.
Summary of the 22 selective sweeps identified using SweeD, including chromosomal position, number of SNPs that fell within each region and number of candidate genes. See Supplementary Table S6 for details on candidate genes identified in each region.
| Selective sweep name | Selective sweep interval | Chrom. | Minimum likelihood | Maximum likelihood | Minimum Alpha* | Maximum Alpha* | Start position (bp) | End position (bp) | Interval (kb) | No. of SNPs within the selective sweep interval (Dataset-4) | No. of candidate genes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr1-Reg-01 | 1:106060208-110288743 | 1 | 3.2 | 5.9 | 3.9E-06 | 4.5E-05 | 106,060,208 | 110,288,743 | 4229 | 125 | 45 |
| Chr1-Reg-02 | 1:218716421-219612163 | 1 | 3.3 | 4.1 | 1.6E-05 | 3.9E-04 | 218,716,421 | 219,612,163 | 896 | 8 | 9 |
| Chr3-Reg-01 | 3:25123538-25922284 | 3 | 3.6 | 8.5 | 2.5E-05 | 1.1E-04 | 25,123,538 | 25,922,284 | 799 | 22 | 14 |
| Chr3-Reg-02 | 3:127512961-127518662 | 3 | 3.1 | 3.1 | 1.7E-04 | 1.7E-04 | 127,512,961 | 127,518,662 | 6 | 14 | 2 |
| Chr3-Reg-03 | 3:215786813-216005903 | 3 | 4.8 | 4.8 | 9.9E-05 | 9.9E-05 | 215,786,813 | 216,005,903 | 219 | 37 | 4 |
| Chr4-Reg-01 | 4:149724977-149899895 | 4 | 4.2 | 4.2 | 6.4E-05 | 6.4E-05 | 149,724,977 | 149,899,895 | 175 | 34 | 1 |
| Chr4-Reg-02 | 4:186912590-187083281 | 4 | 4.3 | 4.8 | 1.1E-04 | 1.4E-04 | 186,912,590 | 187,083,281 | 171 | 41 | 6 |
| Chr5-Reg-01 | 5:49802255-49836436 | 5 | 3.2 | 3.2 | 1.3E-04 | 1.3E-04 | 49,802,255 | 49,836,436 | 34 | 11 | 0 |
| Chr5-Reg-02 | 5:179785894-179940120 | 5 | 3.3 | 5.4 | 9.5E-05 | 5.5E-04 | 179,785,894 | 179,940,120 | 154 | 9 | 1 |
| Chr5-Reg-03 | 5:184394549-184699627 | 5 | 3.2 | 3.2 | 9.8E-05 | 9.8E-05 | 184,394,549 | 184,699,627 | 305 | 26 | 6 |
| Chr6-Reg-01 | 6:140675365-140726905 | 6 | 3.2 | 3.3 | 8.4E-05 | 2.6E-04 | 140,675,365 | 140,726,905 | 52 | 17 | 1 |
| Chr6-Reg-02 | 6:150939481-151135404 | 6 | 3.4 | 4.3 | 4.7E-05 | 6.8E-04 | 150,939,481 | 151,135,404 | 196 | 38 | 4 |
| Chr7-Reg-01 | 7:32523-1269208 | 7 | 3.2 | 3.4 | 1.8E-05 | 2.2E-05 | 32,523 | 1,269,208 | 1237 | 119 | 32 |
| Chr7-Reg-02 | 7:11953168-13065716 | 7 | 3.3 | 3.6 | 2E-05 | 2.4E-05 | 11,953,168 | 13,065,716 | 1113 | 28 | 23 |
| Chr7-Reg-03 | 7:120966174-121400969 | 7 | 3.3 | 3.6 | 5.8E-05 | 1.2E-04 | 120,966,174 | 121,400,969 | 435 | 71 | 9 |
| Chr7-Reg-04 | 7:131185931-132315208 | 7 | 3.2 | 3.3 | 2E-05 | 8.2E-05 | 131,185,931 | 132,315,208 | 1129 | 100 | 20 |
| Chr8-Reg-01 | 8:27653451-28591523 | 8 | 3.4 | 3.9 | 2.5E-05 | 1.0E-04 | 27,653,451 | 28,591,523 | 938 | 35 | 15 |
| Chr8-Reg-02 | 8:65750670-67244274 | 8 | 3.2 | 5.0 | 1E-05 | 3.0E-04 | 65,750,670 | 67,244,274 | 1494 | 1 | 25 |
| Chr8-Reg-03 | 8:111704655-112150258 | 8 | 3.5 | 3.9 | 2.9E-05 | 9.8E-05 | 111,704,655 | 112,150,258 | 446 | 28 | 3 |
| Chr8-Reg-04 | 8:157235205-157836943 | 8 | 3.3 | 3.7 | 3.2E-05 | 3.8E-05 | 157,235,205 | 157,836,943 | 602 | 87 | 21 |
| Chr9-Reg-01 | 9:7105365-7663379 | 9 | 3.2 | 3.9 | 2E-05 | 6.3E-05 | 7,105,365 | 7,663,379 | 558 | 59 | 15 |
| Chr10-Reg-01 | 10:29222096-30868221 | 10 | 3.2 | 4.1 | 1E-05 | 7.9E-05 | 29,222,096 | 30,868,221 | 1646 | 34 | 9 |
*The minimum and maximum alpha values are given in exponentials (e.g., 3.9E-06 = 3.9 × 10−6).