Table 1.
Comparison of assembly statistics between rheMac8 and rheMacS
| Assembly | rheMac8 | rheMacS |
|---|---|---|
| Assembly approach | WGS and BAC | WGS and Hi-C |
| Sequencing platform | Sanger, Illumina | PacBio, Bionano, Hi-C, Illumina |
| Number of contigs | 348,493 | 4741 |
| Contig N50 (Mbp) | 0.11 | 8.19 |
| Number of scaffolds | 286,263 | 4543 |
| Scaffold N50 (Mbp) | 4.19 | 13.64 |
| Number of gapsa | 47,882 | 2858 |
| Total gap length (Mbp)a | 72.05 | 5.46 |
| Total bases (bp)b | 2,835,963,390 | 2,955,490,605 |
| Ungapped bases (bp)c | 2,763,913,633 | 2,950,026,318 |
The assembly statistics of rheMac8 were obtained from NCBI (accession number: GCA_000772875.3). WGS whole-genome shotgun, BAC bacterial artificial chromosome
aOnly N-base regions in the assembled chromosomes were counted
bOnly chromosome-placed bases were counted
cNon-N bases in the assembly