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. 2019 Sep 18;17:75. doi: 10.1186/s12915-019-0697-6

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Assembly pipeline for the 60444 and TME3 African cassava genomes. a Overview of the processing pipeline used for the assemblies (see Additional file 3 for details). b Pseudomolecule validation using the location of SNP markers on the physical map (x-axis) as compared to their position on the composite cassava genetic map [33] (y-axis) for Chr.9, which is a single scaffold 176_TME3. Each genetic marker is depicted as a dot on the plot (937 data points). c Graphical representation of mean local recombination frequencies between SNP markers along scaffold 176_TME3. The x-axis represents the physical positions of the means on Chr 9, and the y-axis indicates the recombination ratio (centiMorgan (cM)/Mb) in each 1-Mb sliding window