TABLE 1.
Host | Parasite species or strain | No. of PIRb genes | Genome size (Mb) | GC content (%) | No. of scaffolds | No. of predicted genesc | No. of predicted proteinsc | Data release date (mo/day/yr) | Data update date (mo/day/yr) | Reference(s) |
---|---|---|---|---|---|---|---|---|---|---|
Humans | P. falciparum 3D7 | 189 | 23.2 | 19.3 | 14 | 5,712 | 5,460 | 10/2/02 | 3/31/16 | 27, 29 |
P. vivax | 1,212 | 29.1 | 39.7 | 374 | 6,830 | 6,677 | 10/6/16 | 10/6/16 | 8, 285 | |
P. ovale | >2,100 | 33.5 | 29.4 | 779 | 6,986 | 6,228 | 8/3/16 | 9/15/16 | 33 | |
P. ovale subsp. wallikeri | 1,375 | 33.5 | 28.9 | 1,914 | 8,582 | 8,421 | 6/16/16 | 6/16/16 | 8 | |
P. ovale subsp. curtisi | 1,949 | 33.5 | 28.4 | 4,025 | 7,280 | 7,162 | 6/16/16 | 6/16/16 | 8 | |
P. malariae | 255 | 33.6 | 24.7 | 63 | 6,709 | 6,573 | 9/23/16 | 9/23/16 | 8 | |
P. knowlesi | 71 | 24.4 | 38.7 | 28 | 5,483 | 5,323 | 5/15/17 | 5/15/17 | 6, 8 | |
P. inui San Antonio | 27.4 | 42.4 | 323 | 5,879 | 5,832 | 1/31/14 | 4/31/14 | https://plasmodb.org/plasmo/app/record/organism/NCBITAXON_1237626 | ||
Chimpanzees | P. reichenowi | 351 | 24.0 | 19.3 | 261 | 5,909 | 5,741 | 3/25/18 | 3/25/18 | 29 |
Old World monkeys | P. cynomolgi B | 265 | 26.2 | 40.4 | 1,663 | 5,776 | 5,716 | 5/31/12 | 9/16/15 | 31 |
P. coatneyi Hackeri | 771 | 27.7 | 39.7 | 14 | 5,575 | 5,516 | 7/6/16 | 2/2/17 | https://plasmodb.org/plasmo/app/record/organism/TMPTX_pcoaHackeri | |
Rodents | P. yoelii 17X | 980 | 22.8 | 21.1 | 154 | 6,257 | 6,091 | 8/27/14 | 10/26/17 | 28, 286 |
P. berghei ANKA | 217 | 18.5 | 22.1 | 100 | 5,245 | 4,928 | 8/27/14 | 10/24/17 | 28, 286 | |
P. chabaudi AS | 201 | 18.9 | 23.6 | 39 | 5,364 | 5,217 | 8/27/14 | 5/13/16 | 28, 286 | |
P. vinckei | 18.2 | 23.4 | 49 | 5,009 | 4,954 | 6/16/14 | 7/30/14 | 287, 288 | ||
Birds | P. relictum SGS1 | 4 | 22.6 | 18.4 | 498 | 5,306 | 5,138 | 11/17/16 | 1/9/17 | 30 |
P. gallinaceum 8A | 20 | 23.8 | 17.8 | 152 | 5,439 | 5,280 | 1/9/17 | 30, 289, 290 |
All information was obtained through PubMed searches. More sequences from different strains of each species may be available.
PIR, Plasmodium interspersed repeat.
Includes updated information from PlasmoDB.