TABLE 2.
Feature summary of the 39 genomes compared in this work.
| Strain | Year of isolation | Country of isolation | Sequence Type/Clade | Carbapenem resistance gene | Isaba1 upstream blaOXA–51 like | Isaba1 upstream blaADC–52 like | blaCARB–PSE | floR | sul2 | aadB | aph (3′)-Ic | adeS | comEC/rec2 | Accession number |
| 2MG | 2012 | Italy | ST78A (SMAL) | X | X | X | X | X | X | X | INT | GCA_900161905 | ||
| 25C30 | 2011 | Italy | ST78A (SMAL) | X | X | X | X | X | X | X | INT | GCA_900161985 | ||
| 20C15 | 2011 | Italy | ST78A (SMAL) | blaOXA–23, blaOXA–58 | X | X | X | X | X | X | INT | GCA_900161955 | ||
| 3909 | 2007 | Italy | ST78A (SMAL) | blaOXA–58 | X | X | X | X | X | X | INT | GCA_000189695 | ||
| 2RED09 | 2009 | Italy | ST78A (SMAL) | blaOXA–58 | X | X | X | X | X | X | INT | GCA_900161995 | ||
| 14336 | 2010 | Italy | ST78A (SMAL) | blaOXA–58 | X | X | X | X | X | INT | GCA_900161895 | |||
| 72SM01 | 2007 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900162015 | |||
| 96SM | 2012 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161925 | |||
| 103SM | 2012 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161885 | |||
| 74SM01 | 2007 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161965 | |||
| 65SM01 | 2006 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161975 | |||
| 68SM01 | 2007 | Italy | ST78A (SMAL) | X | X | X | X | X | X | X | INT | GCA_900161875 | ||
| 61SM01 | 2006 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161945 | |||
| 5MO | 2009 | Italy | ST78A (SMAL) | blaOXA–23 | X | X | X | X | X | X | INT | GCA_900161915 | ||
| MGTN | 2004 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900161935 | |||
| MONUR | 2004 | Italy | ST78A (SMAL) | X | X | X | X | X | X | INT | GCA_900162005 | |||
| TG22142 | 2011 | United States | ST78A | X | X | X | X | X | X | X | INT | X | GCA_000453965 | |
| TG22146 | 2011 | United States | ST78A | X | X | X | X | X | X | X | INT | X | GCA_000453985 | |
| TG22150 | 2011 | United States | ST78A | X | X | X | X | X | INT | X | GCA_000453025 | |||
| ABUH393 | 2009 | United States | ST78B | blaOXA–23 | X | X | GCA_002014105 | |||||||
| ABBL026 | 2006 | United States | ST78B | X | X | GCA_001432845 | ||||||||
| UH1752 | 2007 | United States | ST78B | X | X | GCA_000809505 | ||||||||
| UH5207 | 2007 | United States | ST78B | X | X | GCA_000516155 | ||||||||
| PR355 | NA | United States | ST78B | X | X | GCA_002136855 | ||||||||
| 1096934 | 2012 | United States | ST78B | X | X | GCA_000581755 | ||||||||
| PR308 | NA | United States | ST78B | X | X | GCA_002136675 | ||||||||
| PR385 | NA | United States | ST78B | X | X | GCA_002138065 | ||||||||
| PR371 | NA | United States | ST78B | X | X | GCA_002137185 | ||||||||
| 855125 | 2012 | United States | ST78B | X | X | GCA_000681555 | ||||||||
| 831240 | 2012 | United States | ST78B | X | X | GCA_000581975 | ||||||||
| ABBL025 | 2006 | United States | ST78 | X | X | GCA_001432665 | ||||||||
| BM4587 | NA | United States | ST621 | X | X | GCA_000731965 | ||||||||
| AB900 | 2003 | United States | ST49 | X | X | GCA_000173395 | ||||||||
| OIFC111 | 2003 | United States | ST49 | X | X | GCA_000309155 | ||||||||
| PR333 | NA | United States | ST49 | X | X | GCA_002137645 | ||||||||
| PR373 | NA | United States | ST49 | X | X | GCA_002137215 | ||||||||
| ARLG1941 | NA | NA | ST49 | X | X | GCA_002144835 | ||||||||
| PR389 | NA | United States | ST49 | X | X | GCA_002138155 | ||||||||
| 1293320 | 2011 | United States | ST49 | X | X | GCA_000584455 |
For Further information, see Table 1 and Supplementary Table S1. X, presence of a gene or phenotype; INT, interruption of a gene; NA, datum not available.