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. 2019 Sep 17;85(19):e00102-19. doi: 10.1128/AEM.00102-19

TABLE 1.

Substrates used in this study and the enzymes that hydrolyze thema

Substrate Abbreviation Putative enzyme
l-Arginine–7-amido-4-methylcoumarin Arg-AMC Arginyl aminopeptidase
l-Glycine–7-amido-4-methylcoumarin Gly-AMC Glycyl aminopeptidase
l-Leucine–7-amido-4-methylcoumarin Leu-AMC Leucyl aminopeptidase
Carboxybenzoyl-glycine-glycine-arginine–7-amido-4-methylcoumarin Z-GGR-AMC Gingipain and other endopeptidases
Alanine-alanine-phenylalanine–7-amido-4-methylcoumarin AAF-AMC Clostripain and other endopeptidases
Boc-valine-proline-arginine-AMC Boc-VPR-AMC Gingipain and other endopeptidases
d-Phenylalanine–AMC d-Phe–AMC d-Phenyalanine aminopeptidase
l-Phenylalanine–AMC l-Phe–AMC l-Phenylalanine aminopeptidase
Ornithine-AMC Orn-AMC Ornithine aminopeptidase
a

AMC, 7-amido-4-methylcoumarin, the moiety that becomes fluorescent after hydrolysis of the peptide bond. All amino acids are in the l-stereoconformation unless otherwise noted. Enzymes are described as “putative” because the substrate specificity of many environmental peptidases is fairly broad, so multiple peptidases may hydrolyze any given substrate.