TABLE 1.
Substrate | Abbreviation | Putative enzyme |
---|---|---|
l-Arginine–7-amido-4-methylcoumarin | Arg-AMC | Arginyl aminopeptidase |
l-Glycine–7-amido-4-methylcoumarin | Gly-AMC | Glycyl aminopeptidase |
l-Leucine–7-amido-4-methylcoumarin | Leu-AMC | Leucyl aminopeptidase |
Carboxybenzoyl-glycine-glycine-arginine–7-amido-4-methylcoumarin | Z-GGR-AMC | Gingipain and other endopeptidases |
Alanine-alanine-phenylalanine–7-amido-4-methylcoumarin | AAF-AMC | Clostripain and other endopeptidases |
Boc-valine-proline-arginine-AMC | Boc-VPR-AMC | Gingipain and other endopeptidases |
d-Phenylalanine–AMC | d-Phe–AMC | d-Phenyalanine aminopeptidase |
l-Phenylalanine–AMC | l-Phe–AMC | l-Phenylalanine aminopeptidase |
Ornithine-AMC | Orn-AMC | Ornithine aminopeptidase |
AMC, 7-amido-4-methylcoumarin, the moiety that becomes fluorescent after hydrolysis of the peptide bond. All amino acids are in the l-stereoconformation unless otherwise noted. Enzymes are described as “putative” because the substrate specificity of many environmental peptidases is fairly broad, so multiple peptidases may hydrolyze any given substrate.