Table 1. Overview of simulations.
Setup | TCR | MHC | peptide | Length of one simulation | N replicas | Total simulation time |
---|---|---|---|---|---|---|
1 | LC13 | HLA-B*08 | FLRGRAYGL | 100 ns | 100 | 10 000 ns |
2 | LC13 | - | - | 100 ns | 100 | 10 000 ns |
3 | JM22 | HLA-A*02 | GILGFVFTL | 100 ns | 10 | 1 000 ns |
4 | JM22 | - | - | 100 ns | 10 | 1 000 ns |
5 | A6 | HLA-A*02 | LLFGYPVYV | 100 ns | 10 | 1 000 ns |
6 | A6 | - | - | 100 ns | 10 | 1 000 ns |
7 | 1G4 | HLA-A*02 | SLLMWITQC | 100 ns | 10 | 1 000 ns |
8 | 1G4 | - | - | 100 ns | 10 | 1 000 ns |
total: 26 000 ns |