Table 1,
Summary of observed time constants by spectroscopic techniques in apo YopH and YopH/ligand complexes.
Enzymes | Observed time constant | Loop open | Loop close | Detection method |
---|---|---|---|---|
Apo YopH | 4 and 30 ns | 4 ns# | 4 ns# | 1, #: 5 |
Apo YopH | ~3 μs | ~5 μs* | ~7 μs* | 2, *: 4 |
Apo YopH | 23 μs | 23 μs | 800 μs | 3 |
YopH/Arsinate | 4 and 50 ns | 1 | ||
YopH/PNCS | 20 - 110 μs | 130 μs | 11 μs | 2 |
Q357F/PNCS | 35 - 250 μs | 380 μs | 26 μs | 2 |
Q357A/PNCS | 13 - 60 μs | 100 μs | 9 μs | 2 |
YopH/peptide | 550 μs | 550 μs | 50 μs | 3 |
1. Fluorescence Anisotropy; 10 2. Fluorescence T-jump (Observed values for E/PNCS are concentration dependent. Loop open/closed values are derived from a four-state model); 12,13 3. NMR (all values are derived from a two-state model), 14 4. UVRR (this work) and 5. MD simulations. 11
pNCS is a YopH specific inhibitor structurally similar to the small molecule substrate pNPP.39