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. Author manuscript; available in PMC: 2019 Sep 19.
Published in final edited form as: J Phys Chem B. 2019 Sep 4;123(37):7840–7851. doi: 10.1021/acs.jpcb.9b06759

Table 1,

Summary of observed time constants by spectroscopic techniques in apo YopH and YopH/ligand complexes.

Enzymes Observed time constant Loop open Loop close Detection method
Apo YopH 4 and 30 ns 4 ns# 4 ns# 1, #: 5
Apo YopH ~3 μs ~5 μs* ~7 μs* 2, *: 4
Apo YopH 23 μs 23 μs 800 μs 3
YopH/Arsinate 4 and 50 ns 1
YopH/PNCS 20 - 110 μs 130 μs 11 μs 2
Q357F/PNCS 35 - 250 μs 380 μs 26 μs 2
Q357A/PNCS 13 - 60 μs 100 μs 9 μs 2
YopH/peptide 550 μs 550 μs 50 μs 3

1. Fluorescence Anisotropy; 10 2. Fluorescence T-jump (Observed values for E/PNCS are concentration dependent. Loop open/closed values are derived from a four-state model); 12,13 3. NMR (all values are derived from a two-state model), 14 4. UVRR (this work) and 5. MD simulations. 11

pNCS is a YopH specific inhibitor structurally similar to the small molecule substrate pNPP.39