Table 2.

Correlation of Minimal Residual Disease status with Deletions and Duplications in individual genes/loci.

CNA in genes	MRD −	MRD+	Fisher's exact (p)	FDR (p. adj.)	CNA in Genes	MRD −	MRD+	Fisher's exact (p)	FDR (p. adj.)
IKZF1 deletion	13	6	0.77	1	LEF1 gain	2	6	0.005*	0.08
IKZF wt	54	19			LEF1 wt	64	19
CDKN2A/B deletion	18	2	0.08	0.7	NR3C2 gain	3	6	0.010*	0.08
CDKN2A/B wt	48	22			NR3C2 wt	62	18
BTG1 Deletion	4	1	1	1	RUNX1 gain	14	12	0.015*	0.08
BTG1 wt	61	24			RUNX1 wt	50	11
EBF1 deletion	3	0	0.55	0.95	PAR1 gain	10	9	0.042*	0.17
EBF1 wt	58	25			PAR1 wt	56	16
PAX5 deletion	16	3	0.38	0.86	PHF6 gain	10	8	0.081	0.25
PAX5 wt	49	20			PHF6 wt	57	17
ETV6 deletion	13	4	0.77	1	CASP8AP2 gain	6	6	0.092	0.25
ETV6 wt	53	21			CASP8AP2 wt	57	19
Rb1 deletion	3	0	0.56	0.95	PTPN2 gain	2	3	0.122	0.28
Rb1 wt	64	25			PTPN2 wt	65	22
MLLT3 deletion	12	2	0.33	0.86	MYB gain	7	6	0.177	0.35
MLLT3 wt	54	23			MYB wt	58	19
MTAP deletion	16	2	0.14	0.79	PTEN gain	9	6	0.224	0.4
MTAP wt	50	23			PTEN wt	58	19
NF1+SUZ12 del.	0	2	0.06	0.7	TOX gain	5	4	0.261	0.42
NF1+SUZ12 wt	61	19			TOX wt	59	21
EPHA1 deletion	2	2	0.3	0.86	ADD3 gain	3	3	0.34	0.47
EPHA1 wt	64	23			ADD3 wt	63	22
EZH2 deletion	2	2	0.3	0.86	IGHM gain	10	6	0.35	0.47
EZH2 wt	64	23			IGHM wt	49	16
VPREB deletion	13	7	0.41	0.86	DMD gain	6	4	0.446	0.55
VPREB wt	53	18			DMD wt	61	20
CD200/BTLA deletion	4	1	1	1	PDGFRB gain	3	0	0.5	0.57
CD200/BTLA wt	62	23			PDGFRB wt	64	25
TBL1XR1 deletion	5	1	1	1	NR3C1 gain	4	0	0.57	0.61
TBL1XR1 wt	62	23			NR3C1 wt	62	24
IGHM deletion	8	3	1	1	LMO1 gain	4	2	0.668	0.67
IGHM wt	49	16			LMO1 wt	61	23

^*and bold p < 0.05 were considered statistically significant.

p values showing a trend of correlation are shown in bold.