Online-only Table 1.
FAIRness assessment for UniProt.
| Metric | Requirement | Resource | Resource data/content |
|---|---|---|---|
| IRI for your resource | URL | PURL | |
| http://purl.uniprot.org/void#UniProtDataset | http://purl.uniprot.org/uniprot/P05067 | ||
| Release http://purl.uniprot.org/void#UniProtDataset_2019_02 | |||
| F1A | IRI for a registered identifier scheme for your resource’s IRI | PURL schema | PURL schema |
| http://purlz.org | http://purlz.org | ||
| F1B | IRI to a document describing the persistence policy for the identifier of this data | http://purlz.org | http://purlz.org |
| https://www.uniprot.org/help/accession_numbers | |||
| F2 | IRI for machine-readable metadata for the resource | ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/void.rdf | http://purl.uniprot.org/uniprot/P05067.rdf |
| IRI to file format for this metadata | http://purl.uniprot.org/core/ | http://purl.uniprot.org/core/ | |
| F3 | Is the resource identifier specified in the metadata? | Yes | Yes |
| F4 | URL to a search engine indexing your resource | https://www.google.com | https://www.google.com |
| Search query/terms | First hit: uniprot | First hit: uniprot P05067 | |
| First hit: universal protein resource | Sixth hit: amyloid beta precursor protein | ||
| A1.1 | URL to the description of the protocol | HTTP | HTTP |
| https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol | https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol | ||
| Is the protocol open? | Yes | Yes | |
| Is the protocol (royalty) free? | Yes | Yes | |
| A1.2 | Is authorization required to access the content of your resource? | No | No |
| A2 | URL to metadata longevity plan | ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/README | Provided at dataset level |
| I1 | URL to a specification language | RDFS and UniProt ontology | RDFS and UniProt ontology |
| https://www.w3.org/TR/rdf-schema/ | https://www.w3.org/TR/rdf-schema/ | ||
| http://purl.uniprot.org/core/ | http://purl.uniprot.org/core/ | ||
| I2 | Maximum 3 IRIs for vocabularies used within the (meta) data | http://rdfs.org/ns/void# | http://purl.obolibrary.org/obo/GO |
| http://purl.org/dc/terms/ | http://purl.bioontology.org/ontology/OMIM/ | ||
| http://xmlns.com/foaf/0.1/ | http://biohackathon.org/resource/faldo | ||
| I3 | URL to a LinkSet (https://www.w3.org/TR/void/) for the resource | For the RDF/XML distribution | Provided at dataset level |
| ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/void.rdf | |||
| R1.1 | URL to license/terms of use for the resource | https://www.uniprot.org/help/license | Provided at dataset level |
| https://creativecommons.org/licenses/by/4.0/ | |||
| R1.2 | Maximum 3 IRIs used to describe the provenance of the resource | http://purl.org/dc/terms/ | http://purl.org/dc/terms/ |
| http://xmlns.com/foaf/0.1/ | http://purl.uniprot.org/core/ | ||
| http://purl.org/pav/ | |||
| Maximum 3 IRIs used to describe domain information | Considering the dataset as domain here | Considering proteins as domain here | |
| http://purl.org/dc/terms/ | http://purl.uniprot.org/core/ | ||
| http://xmlns.com/foaf/0.1/ | http://purl.bioontology.org/ontology/OMIM/ | ||
| http://rdfs.org/ns/void# | http://purl.obolibrary.org/obo/ECO_ | ||
| R1.3 | IRI that represents certification from a recognized authority | http://yummydata.org/ | Provided at dataset level |