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. 2019 Sep 20;9:13616. doi: 10.1038/s41598-019-49897-1

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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GIT microbiota composition of domestic pigs (sus scrofa) obtained from Africa (AFR pig), from a conventional commercial farm (COM pig) and from SPF facilities (SPF pig). The mean relative abundance (%) of OTUs found in feces is presented. Each graph represents the OTUs at different taxonomical levels: phylum (A), family (B), genus (C). Only the ten most relatively abundant OTUs are shown in the legend.