Table 1:

Standard libraries and tools used by each implementation of Bionitio

Language	Build/deploy	FASTA reading	Command-line argument parsing	Unit testing	Logging	Static analysis	Code format
C	make	kseq	getopt	assert	custom	lint	clang-format
C++	cmake	Seqan	boost::program_options	catch	boost::log	cppcheck	clang-format
C#	dotnet	.Net Bio	Microsoft.Extensions. CommandLineUtils	Microsoft.VisualStudio. TestTools.UnitTesting	Serilog	N/A	N/A
Clojure	lieningen	Bioclojure	clojure.tools.cli	clojure.test	timbre	Eastwood	cljfmt
Java	maven	biojava	Apache Commons	junit	custom	checkstyle	checkstyle
JavaScript	node	fasta-parser	commander	mocha	winston	N/A	standard
Haskell	stack	BioHaskell	optparse-applicative	hspec	hslogger	hlint	N/A
Perl	CPAN	BioPerl	Getopt::ArgParse	Test::More	Log::Log4perl	perlcritic	perltidy
Python	pip	biopython	argparse	unittest	logging	pylint	N/A
R	R	seqinr	optparse	testthat	logging	lintr	N/A
Ruby	gem	bioruby	optparse	Test::Unit	logger	N/A	N/A
Rust	cargo	bio::io::fasta	argparse	native test feature of Rust	log, log4rs	N/A	rustfmt

Instances where no appropriate option was available are marked with N/A.