Fig. 4.

(a, b) MP phylogeny of 140 B. pseudomallei ST-109 genomes reconstructed using core-genome orthologous SNPs [overall consistency index (CI)=0.913] (a) and high-resolution ST-109 reconstructed SNP phylogeny with 11 outliers removed (n=129) (CI=0.9937) (b). MSHR0605 was used as the reference for both phylogenies. Environmental and Wildlife Park isolates are labelled, while human samples are denoted by respective isolate (MSHR) IDs. Red circles on branches denote bootstrap values<80. (c) The inset shows a high-resolution view of the Wildlife Park samples from (b). Bars indicate number of SNP’s.