TABLE 1.
Protein identities for FQ-A001 T6SS loci
| Chr.a | Locus |
% aa identity (no. of identical aa/total no.)b | Genec | Predicted function in FQ-A001 | |
|---|---|---|---|---|---|
| FQ-A001 | MJ11 | ||||
| II | VFFQA001_15465 | VFMJ11_A0804 | 99 (198/200) | Hypothetical protein | |
| II | VFFQA001_15470 | VFMJ11_A0805 | 86 (419/486) | tagH | Type VI secretion system-associated FHA domain protein TagH |
| II | VFFQA001_15475 | VFMJ11_A0806 | 100 (166/166) | tssJ (vasD) | Type VI secretion system lipoprotein TssJ |
| II | VFFQA001_15480 | VFMJ11_A0807 | 99 (439/441) | tssK | Type VI secretion system baseplate subunit TssK |
| II | VFFQA001_15485 | VFMJ11_A0808 | 99 (262/263) | tssL (vasF) | DotU family type IV/VI secretion system protein |
| II | VFFQA001_15490 | VFMJ11_A0809 | 95 (477/504) | DUF4150 domain-containing protein | |
| II | VFFQA001_15495 | VFMJ11_A0810 | 21 (52/253) | Hypothetical protein | |
| II | VFFQA001_15500 | No hits on chromosome II | Hypothetical protein | ||
| II | VFFQA001_15505 | No hits on chromosome II | Hypothetical protein | ||
| II | VFFQA001_15510 | VFMJ11_A0812 | 91 (148/163) | Hypothetical protein | |
| II | VFFQA001_15515 | VFMJ11_A0813 | 98 (139/142) | Hypothetical protein | |
| II | VFFQA001_15520 | VFMJ11_A0814 | 88 (2,560/2,912) | Hypothetical protein | |
| II | VFFQA001_15525 | VFMJ11_A0815 | 96 (298/309) | Hypothetical protein | |
| II | VFFQA001_15530 | VFMJ11_A0816 | 93 (403/435) | Hypothetical protein | |
| II | VFFQA001_15535 | VFMJ11_A0817 | 99 (1,116/1,132) | tssM | Type VI secretion system membrane subunit TssM |
| II | VFFQA001_15540 | VFMJ11_A0818 | 100 (149/149) | Lrp/AsnC family transcriptional regulator | |
| II | VFFQA001_15545 | VFMJ11_A0819 | 98 (325/332) | tssG | Type VI secretion system baseplate subunit TssG |
| II | VFFQA001_15550 | VFMJ11_A0820 | 99 (575/582) | vasB (tssF) | Type VI secretion system baseplate subunit TssF |
| II | VFFQA001_15555 | VFMJ11_A0821 | 99 (134/136) | vasA_2 (tssE) | Type VI secretion system baseplate subunit TssE |
| II | VFFQA001_15560 | VFMJ11_A0822 | 99 (490/492) | tssC | Type VI secretion system contractile sheath large subunit |
| II | VFFQA001_15565 | VFMJ11_A0823 | 100 (169/169) | vipB (tssB) | Type VI secretion system contractile sheath small subunit |
| II | VFFQA001_15570 | VFMJ11_A0824 | 92 (478/519) | vipA (tssA) | Type VI secretion system protein TssA |
| II | VFFQA001_15575 | VFMJ11_A0825 | 98 (645/661) | pknA | Protein kinase family protein |
| II | VFFQA001_15580 | VFMJ11_A0826 | 98 (303/313) | Hypothetical protein | |
| II | VFFQA001_15585 | VFMJ11_A0827 | 99 (321/325) | DUF2169 domain-containing protein | |
| II | VFFQA001_15590 | VFMJ11_A0828 | 97 (428/441) | Hypothetical protein | |
| II | VFFQA001_15595 | VFMJ11_A0829 | 99 (162/164) | Hypothetical protein | |
| II | VFFQA001_15600 | VFMJ11_A0830 | 99 (688/692) | vrgG (tssI) | Type VI secretion system tip protein VgrG |
| II | VFFQA001_15605 | VFMJ11_A0831 | 98 (168/172) | hcp | Hcp family type VI secretion system effector |
| II | VFFQA001_15610 | VFMJ11_A0832 | 99 (882/888) | tssH (clpV) | Type VI secretion system ATPase TssH |
| II | VFFQA001_15615 | VFMJ11_A0833 | 95 (509/534) | vasH | Sigma 54-dependent Fis family transcriptional regulator |
| II | VFFQA001_15620 | VFMJ11_A0834 | 97 (161/166) | Hypothetical protein | |
| II | VFFQA001_15625 | VFMJ11_A0835 | 27 (431/1,615) | OmpA family protein | |
| II | VFFQA001_15630 | VFMJ11_A0842 | 37 (136/364) | WD40 repeat domain-containing protein | |
| II | VFFQA001_15635 | VFMJ11_A0837 | 45 (252/564) | Hypothetical protein | |
| I | VFFQA001_07810 | No hits on chromosome I | Pseudogene; frameshifted in FQ-A001 | ||
| I | VFFQA001_07815 | *d | * | Hypothetical protein | |
| I | VFFQA001_07820 | VFMJ11_1491 | 74 (264/359) | Hypothetical protein | |
| I | VFFQA001_07825 | VFMJ11_1492 | 52 (426/817) | LysM peptidoglycan-binding domain-containing protein | |
| I | VFFQA001_07830 | VFMJ11_1493 | 95 (187/197) | DUF4123 domain-containing protein | |
| I | VFFQA001_07835 | VFMJ11_1494 | 98 (741/754) | vrgG1 (tssI1) | Type VI secretion system tip protein VgrG |
| I | VFFQA001_07840 | VFMJ11_1495 | 100 (172/172) | hcp1 | Hcp family type VI secretion system effector |
| I | VFFQA001_07845 | VFMJ11_1497 | 100 (110/110) | Zinc chelation protein SecC | |
a
Chr., chromosome.
b
aa, amino acid.
c
Gene names in parentheses are alternative gene names that have been reported.
d
*, the top hit for VFFQA001_07815 (59 aa) was VFMJ11_1492 (844 aa).