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. 2019 Sep 20;7:e7649. doi: 10.7717/peerj.7649

Table 1. Assembly comparison of Asclepias, Calotropis, Catharanthus, Rhazya, and Coffea.

Species Genome size (Mbp) Assembly size (Mbp) N50 (kbp) # Scaffolds Sequencing method
Coffea canephora 710 568.6 1,261 13,345 454 SE & mate-pair, Illumina SE & PE, BACs, haploid accession
Rhazya stricta 200 274 5,500 980 Illumina PE & mate-pair, PacBio, optical mapping
Catharanthus roseus 738 506 27.3 41,176 Illumina PE, inbred accession
Calotropis gigantea 225 157.3 805 1,536 Illumina PE & mate-pair
Asclepias syriaca 420 156.6 3.4 54,266 Illumina PE & mate-pair

Notes:

Sequencing method includes technologies and materials used in sequencing.

N50, 50% of the assembly is contained in scaffolds of this length or larger; BAC, bacterial artificial chromosome; SE, single-end; PE, paired-end.