Table 1. Assembly comparison of Asclepias, Calotropis, Catharanthus, Rhazya, and Coffea.
Species | Genome size (Mbp) | Assembly size (Mbp) | N50 (kbp) | # Scaffolds | Sequencing method |
---|---|---|---|---|---|
Coffea canephora | 710 | 568.6 | 1,261 | 13,345 | 454 SE & mate-pair, Illumina SE & PE, BACs, haploid accession |
Rhazya stricta | 200 | 274 | 5,500 | 980 | Illumina PE & mate-pair, PacBio, optical mapping |
Catharanthus roseus | 738 | 506 | 27.3 | 41,176 | Illumina PE, inbred accession |
Calotropis gigantea | 225 | 157.3 | 805 | 1,536 | Illumina PE & mate-pair |
Asclepias syriaca | 420 | 156.6 | 3.4 | 54,266 | Illumina PE & mate-pair |
Notes:
Sequencing method includes technologies and materials used in sequencing.
N50, 50% of the assembly is contained in scaffolds of this length or larger; BAC, bacterial artificial chromosome; SE, single-end; PE, paired-end.