Fig 1. Flow chart of the VAP workflow.
FastQ files are QC using FastQC, mapped using three aligners. BAM files are pre-processed by Picard and GATK, then merged, annotated and filtered to achieve high-confident SNPs.
Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.