Fig 6. Overlap of SNPs found in coding regions from RNA-seq and WGS.

66% of the coding variants identified in WGS data were found in RNA-seq. However, the remaining WGS coding variants were not detected as a result of either: lack of expression/transcription (“no transcription”), the position was homozygous in RNA (“no variation”), “found but filtered” signifying that the position was detected but removed by one of our filtering steps, or “filtered” which indicates the position was heterozygous but filtered because it didn’t meet the default parameters for variant detection.