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. 2019 Sep 23;14(9):e0216838. doi: 10.1371/journal.pone.0216838

Table 2. Summary from the multiple aligners; read mapping statistics and variant calls.

Tools % reads mapped % reference covered Variants SNPs % similar SNPs
TopHat 87.7 23.07 578655 535505 96.12
HiSAT 90.53 23.44 636948 583547 88.21
STAR 87.81 23.7 798696 708391 72.66