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. 2002 Feb 15;22(4):1208–1217. doi: 10.1523/JNEUROSCI.22-04-01208.2002

Table 1.

Oligodeoxynucleotide probes used for in situhybridization

Target Species Probe position Mismatch Sequence of the oligonucleotide Tm (°C)
α3 Rat 138–182 ? 5′-GGACACCTCAAACTGGATGATGACTGGATGGGACACATTAGCCAC-3′ 65
α4 Mouse 570–614 0 5′-GAAGTCCAGTTGGTCCACACGGCTGTGCATGCTCACCAAGTCAAT-3′ 71
α5 Rat 1077–1121 5 5′-CCGAGATTTAGGTCCAgCccCacTCTCGGCTTCTTCTCTCTGAGT-3′ 73
α6 Mouse 1451–1497 0 5′-GGGACAATACCAATTAAGAGTTTCCTGTGTTCCCAAGCAGTGGCTGC-3′ 66
α7 Rat 1206–1250 2 5′-ATCATGTGTTGGGGAGCAGGCCAAACGgCCACAtACGACCCCAGA-3′ 71
β2 Mouse 1269–1313 0 5′-TCGCATATGGTCCGCAATGAAGCGTACACCGTCCACAGCTTCCCG-3′ 71
β4 Rat 1261–1305 ? 5′-AGCTGACACCCTCTAATGCTTCCTGTAGATCTTCCCGGAACCTCC-3′ 71
TH Rat 1429–1468 2 5′-AGGTGTGCAGCTCATCCTGGACCCCCTCcAAGGAGCGCt-3′ 79
D1 Mouse 592–638 0 5′-GCTGACGATCATAATGGCTACGGGGATGTAAAAGCTTATGAGGGAGG-3′ 63
D2 Mouse 928–972 0 5′-GTTTGGCAGGACTGTCAGGGTTGCTATGTAGACCGTGGTGGGATG-3′ 70
CCK Rat 264–308 3 5′-gAAATCCATCCAGCCCATGTAGTCCCGGTCACTTATcCTgTGGCT-3′ 74
PPE Rat 386–430 3 5′-GCATCCTTCTTCATGAAagCGCCATACCTCTTGGCAAGGATCTCg-3′ 67
PPT Rat 123–167 1 5′-GGCGATTCTCTGaAGAAGATGCTCAAAGGGCTCCGGCATTGCCTC-3′ 68

The melting temperature (Tm) is calculated for the most stringent wash condition (0.01 m NaCl, 0% formamide) as described byLe Novère et al. (1996). The indicated position is in reference to the A of the ATG. When the oligonucleotide was designed according to the rat cDNA sequence, and when corresponding mouse cDNA sequence was available, we indicated the number and position (lowercase characters) of the mismatches. (“?” means that the mouse cDNA sequence was not available).