Table 1.
Target | Species | Probe position | Mismatch | Sequence of the oligonucleotide | Tm (°C) |
---|---|---|---|---|---|
α3 | Rat | 138–182 | ? | 5′-GGACACCTCAAACTGGATGATGACTGGATGGGACACATTAGCCAC-3′ | 65 |
α4 | Mouse | 570–614 | 0 | 5′-GAAGTCCAGTTGGTCCACACGGCTGTGCATGCTCACCAAGTCAAT-3′ | 71 |
α5 | Rat | 1077–1121 | 5 | 5′-CCGAGATTTAGGTCCAgCccCacTCTCGGCTTCTTCTCTCTGAGT-3′ | 73 |
α6 | Mouse | 1451–1497 | 0 | 5′-GGGACAATACCAATTAAGAGTTTCCTGTGTTCCCAAGCAGTGGCTGC-3′ | 66 |
α7 | Rat | 1206–1250 | 2 | 5′-ATCATGTGTTGGGGAGCAGGCCAAACGgCCACAtACGACCCCAGA-3′ | 71 |
β2 | Mouse | 1269–1313 | 0 | 5′-TCGCATATGGTCCGCAATGAAGCGTACACCGTCCACAGCTTCCCG-3′ | 71 |
β4 | Rat | 1261–1305 | ? | 5′-AGCTGACACCCTCTAATGCTTCCTGTAGATCTTCCCGGAACCTCC-3′ | 71 |
TH | Rat | 1429–1468 | 2 | 5′-AGGTGTGCAGCTCATCCTGGACCCCCTCcAAGGAGCGCt-3′ | 79 |
D1 | Mouse | 592–638 | 0 | 5′-GCTGACGATCATAATGGCTACGGGGATGTAAAAGCTTATGAGGGAGG-3′ | 63 |
D2 | Mouse | 928–972 | 0 | 5′-GTTTGGCAGGACTGTCAGGGTTGCTATGTAGACCGTGGTGGGATG-3′ | 70 |
CCK | Rat | 264–308 | 3 | 5′-gAAATCCATCCAGCCCATGTAGTCCCGGTCACTTATcCTgTGGCT-3′ | 74 |
PPE | Rat | 386–430 | 3 | 5′-GCATCCTTCTTCATGAAagCGCCATACCTCTTGGCAAGGATCTCg-3′ | 67 |
PPT | Rat | 123–167 | 1 | 5′-GGCGATTCTCTGaAGAAGATGCTCAAAGGGCTCCGGCATTGCCTC-3′ | 68 |
The melting temperature (Tm) is calculated for the most stringent wash condition (0.01 m NaCl, 0% formamide) as described byLe Novère et al. (1996). The indicated position is in reference to the A of the ATG. When the oligonucleotide was designed according to the rat cDNA sequence, and when corresponding mouse cDNA sequence was available, we indicated the number and position (lowercase characters) of the mismatches. (“?” means that the mouse cDNA sequence was not available).