Table III.
A, ADIPOQ | |||||||
---|---|---|---|---|---|---|---|
No. | SNP | Location (GRCh38.p12) | Relation | Major/minor allele | MAF EUR | Observed MAF | Pairwise r2 of linkage disequilibriuma |
1 | rs17366743 | 3:186854300 | Exon 3 coding non-synonymous | T/C | 0.04 | 0.02 | 0.04(1-3); 0.05(1-4); 0.03(1-5) |
2 | rs17300539 | 3:186841671 | Promoter | G/A | 0.07 | 0.07 | 0.02(2-3); 0.04(2-4) |
3 | rs266729 | 3:186841685 | Promoter | C/G | 0.28 | 0.29 | 0.64(3-4)b; 0.02(3-5) |
4 | rs182052 | 3:186842993 | Intron | G/A | 0.39 | 0.38 | 0.04(4-5) |
5 | rs2241766 | 3:186853103 | Exon 2 coding non-synonymous | T/G | 0.13 | 0.06 | |
B, EDN1 | |||||||
No. | SNP | Location (GRCh38.p12) | Relation to gene | Major/minor allele | MAF EUR | Observed MAF | Pairwise r2 of linkage disequilibriuma |
1 | rs2070699 | 6:12292539 | Intron | G/T | 0.47 | 0.5 | 0.04(1-2); 0.23(1-3) |
2 | rs1800542 | 6:12292295 | Intron | G/A | 0.04 | 0.04 | |
3 | rs1800543 | 6:12293904 | Intron | T/C | 0.22 | 0.21 |
aReported for P<0.05, SNP numbers in brackets;
bPotential linkage between the SNPs indicated in brackets. SNP, single-nucleotide polymorphism;ADIPOQ, adiponectin; EDN1, endothelin-1; GRCh38.p12, Genome Reference Consortium human build 38 patch release 12; MAF, minor allele frequency; MAF EUR, European MAF according to Ensembl release 95.