Table 1.
Selected Botrytis-induced genes in Fragaria vesca fruits at 24 hpi with P ≤ 0.05 and absolute fold change (log2) of ≥0.8.
| Gene ID | Annotation | White (24 hpi) | Red (24 hpi) | ||
|---|---|---|---|---|---|
| Fold change (log2) |
P value | Fold change (log2) |
P value | ||
| Recognition and signaling | |||||
| gene09392 | Calmodulin 27 | 0.9 | 3.86E−02 | −1.2 | 5.95E−03 |
| gene21516 | Cysteine-rich RLK28 | −2.3 | 1.27E−02 | ||
| gene17154 | Cysteine-rich RLK29 | −4.4 | 1.85E−04 | 1.9 | 3.61E−02 |
| gene04409 | Disease resistance protein RGA3 | −1.0 | 2.58E−03 | ||
| gene18440 | Disease resistance protein RGA3 | 1.8 | 1.30E−02 | ||
| gene29796 | Glutamate receptor | 2.4 | 2.95E−02 | 2.2 | 2.15E−02 |
| gene24962 | Lectin containing receptor kinase A4.3 | 1.3 | 4.08E−02 | 2.4 | 1.62E−02 |
| gene24085 | Mitogen-activated protein kinase | 1.8 | 2.33E−02 | 1.3 | 4.16E−02 |
| gene22229 | Protein STRUBBELIG-RECEPTOR FAMILY 2 | 1.5 | 1.40E−02 | 2.9 | 9.37E−04 |
| gene19894 | RLK- ERECTA | −2.2 | 4.15E−02 | ||
| gene16992 | Somatic embryogenesis receptor kinase 1 | −2.6 | 1.71E−02 | ||
| gene26498 | BRI 1-associated receptor kinase 1 | −2.8 | 7.73E−03 | ||
| gene03058 | TMV resistance protein N | −2.6 | 2.53E−02 | 2.4 | 3.77E−02 |
| gene24787 | TMV resistance protein N | −2.5 | 1.96E−02 | ||
| gene14188 | TMV resistance protein N | 2.3 | 7.86E−03 | ||
| gene15062 | Wall-associated receptor kinase-like 14 | 0.8 | 1.72E−02 | ||
| gene34339 | Wall-associated receptor kinase-like 4 | 2.1 | 1.00E−02 | ||
| gene34321 | Wall-associated receptor kinase-like 9 | 0.9 | 1.64E−02 | ||
| Transcription factors | |||||
| gene08006 | Transcription factor MYB98 | 2.5 | 2.41E−02 | ||
| gene03712 | Transcription factor MYB21 | 0.9 | 1.71E−02 | ||
| gene24577 | Transcription factor bHLH95 | 1.2 | 4.81E−03 | 1.6 | 1.43E−03 |
| gene01197 | Probable WRKY transcription factor 2 | 0.8 | 4.23E−02 | ||
| gene17698 | Ethylene-responsive transcription factor | 2.2 | 1.54E−02 | ||
| Response to stress and secondary metabolism | |||||
| gene13673 | 4-coumarate-CoA ligase | 2.4 | 4.26E−02 | ||
| gene09753 | Phenylalanine ammonia-lyase | 1.5 | 4.23E−03 | 1.7 | 2.33E−03 |
| gene12577 | 4-coumarate-CoA ligase | 1.3 | 1.92E−02 | ||
| gene23367 | Chalcone-flavonone isomerase | 1.3 | 8.82E−04 | 1.5 | 5.09E−04 |
| gene26826 | Chalcone synthase | 1.3 | 2.10E−03 | 1.5 | 9.79E−04 |
| gene03747 | Dihydroflavonol-4-reductase | −1.7 | 3.57E−02 | ||
| gene15176 | Bifunctional dihydroflavonol 4-reductase | 1.6 | 3.04E−02 | ||
| gene28142 | Cationic peroxidase 1 | 2.8 | 4.99E−02 | 3.2 | 1.30E−02 |
| gene10758 | Peroxidase | −1.3 | 2.23E−02 | ||
| gene00894 | Lignin-forming anionic peroxidase | 2.3 | 1.82E−02 | ||
| gene24296 | Laccase | 2.7 | 2.07E−02 | ||
| gene12086 | Laccase | 1.6 | 4.29E−03 | 2.0 | 6.24E−03 |
| gene15030 | Chitotriosidase-1 | 3.5 | 1.00E−02 | ||
| gene14601 | Thaumatin | 1.3 | 3.84E−03 | ||
| gene32423 | Osmotin-like protein | 1.2 | 1.43E−02 | ||
| gene30565 | Pathogenesis-related protein PR-4B | 1.9 | 2.20E−02 | ||
| gene32087 | Endoglucanase 6 | 1.2 | 8.44E−03 | ||
| gene20640 | Beta-glucosidase 12 | -2.8 | 6.67E−03 | ||
| gene23960 | Dirigent protein | 6.1 | 4.53E−02 | ||
| gene06528 | Beta-galactosidase 9 | -2.1 | 1.47E−02 | 1.2 | 2.87E−02 |
| gene07064 | Major allergen Pru ar 1/PR Bet v | 2.5 | 3.53E−03 | 1.5 | 1.52E−02 |
| gene05122 | Major allergen Pru ar 1/PR Bet v | 2.2 | 3.03E−03 | ||
| gene00814 | Defensin-like protein | −1.1 | 3.03E−03 | −1.0 | 2.23E−03 |
| Cell wall | |||||
| gene20547 | Cellulose synthase-like protein | 1.2 | 8.50E−03 | 2.1 | 2.52E−04 |
| gene19766 | Long-chain-alcohol O-fatty-acyltransferase 5 | 1.9 | 2.33E−02 | 1.2 | 1.71E−02 |
| gene24409 | Callose synthase 9 | -2.1 | 2.77E−03 | 2.33 | 5.22E−03 |
| gene13718 | Xyloglucan endotransglucosylase | 1.3 | 2.81E−02 | ||
| gene00661 | Xyloglucan endotransglucosylase | −2.3 | 3.57E−03 | ||
| gene30789 | Polygalacturonase | −1.3 | 6.33E−03 | 1.7 | 5.47E−03 |
| gene21638 | Polygalacturonase | 1.5 | 3.62E−02 | ||
| gene02221 | Expansin-A4 | 1.7 | 1.34E−02 | ||
| gene24370 | Pectate lyase 1 | 0.9 | 3.09E−02 | 0.9 | 3.41E−02 |
| gene23429 | Pectate lyase 12 | −1.8 | 1.33E−02 | ||
| gene17879 | Pectinesterase 51 | 0.8 | 3.70E−02 | ||
| gene31599 | Pectinesterase 29 | −1.2 | 1.15E−02 | ||
| gene10629 | Pectinesterase 41 | 2.9 | 2.89E−02 | ||