Table 1.

Genome wide transcriptome data from studies integrated in PlasmoDB release43; http://www.plasmodb.org (np: not published)

Method	Plasmodium sp.	Life cycle stages	Refs.
RNA-seq	P. berghei ANKA	5 asexual and sexual stage transcriptomes	[49]
		Female and male gametocyte	[85]
	P. chabaudi chabaudi	Trophozoite transcriptomes after mosquito transmission or direct injection into mice	[86]
	P. yoelii yoelii 17X	Salivary gland sporozoite transcriptomes: WT vs. Puf2-KO	[87]
	P. falciparum 3D7	NSR-seq transcript profiling of malaria-infected pregnant women and children	[88]
		Polysomal and steady-P. berghei state asexual stage transcriptomes	[89]
		Blood stage transcriptome (3D7)	[90]
		Transcriptomes of 7 sexual and asexual life stages	[91]
		Intraerythrocytic cycle transcriptome (3D7)	np
		Strand specific transcriptomes of 4 life cycle stages	[91]
		Transcriptome during intraerythrocytic development	[92]
		Strand specific transcriptome of the intraerythrocytic developmental cycle	[93]
		Ribosome and steady state mRNA sequencing of asexual cell cycle stages	[94]
		Mosquito or cultured sporozoites and blood stage transcriptome (NF54)	np
		Female and male gametocyte transcriptomes	[50]
		Ring, oocyst and sporozoite transcriptomes	[95]
	P. vivax P01	Hypnozoite RNAseq	[29]
		Transcription profile of intraerythrocytic cycle	[96]
	P. cynomolgi strain M	P. cynomolgi transcriptome of whole blood and bone marrow collected during 100-day infection of M. mulatta	[97]
		Hypnozoite, schizont and blood stage transcriptomes (laser microdissection)	[98]
		Liver stage hypnozoite vs schizont transcriptomes (primary culture)	[30]
DNA micro-array	P. berghei ANKA	DOZI mutant transcript profile	[51]
		Transcript profiling of developmental stages—high producer (HP/HPE)	[99]
		AP2-G2 knock out and WT expression profiles	[100]
	P. yoelii yoelii 17X	Liver, mosquito and blood stage expression profiles	[28]
		Life cycle stages	[101]
	P. falciparum 3D7	Pfal3D7 real-time transcription and decay	np
		Invasion pathway knockouts	[102]
		Three isogenic lines w/CQ treatment: expression profiles	[103]
		Life cycle expression data (3D7)	[104]
		Sexually vs asexually committed schizont transcriptional profiles	[105]
		Gametocyte stages I-V transcriptomes	[106]
		Two Sir2 KO lines expression profiling	[107]
		Asexual blood stage transcriptomes of clonal strains	[108]
		Erythrocytic expression time series (3D7, DD2, HB3)	[109, 110]
		Microarray expression from patient samples	[111]
		mRNA half life	[112]
	P. vivax P01	Intraerythrocytic developmental cycle of three isolates	[113]
		Sporozoite expression profiles	[114]
	P. knowlesi strain H	Intraerythrocytic cycle expression profile: in vitro and ex vivo (Pkno PK1(A+))	[115]