Table 1.
Animals sequenced in this study and library/coverage statistics.
| Animal | Platform and library type | Mean fragment length (bp) | Total raw bp | Median depth of aligned reads | |
|---|---|---|---|---|---|
| Health Canada MutaMouse | 1 | Illumina TruSeqa | 480 | 160,972,859,100 | 55X |
| 2 | Illumina TruSeq and Nextera Mate Pair |
3,078 (Nextera Mate Pair) 480 (TruSeq) |
270,924,369,600 | 81X | |
| PacBio RSIIb | 20,000 | 11,900,000,000 | 3.5X | ||
| 3 | Illumina TruSeq | 450 | 159,512,702,850 | 55X | |
| 4 | Illumina TruSeq | 450 | 159,691,600,650 | 54X | |
| 5 | Illumina TruSeq | 444 | 196,932,569,400 | 71X | |
| Covance MutaMouse | Male | Illumina Nextera Mate Pair | 3,849 (Nextera mate pair) | 144,615,033,150 | 32X |
| Female | Illumina Nextera Mate Pair | 3,414 (Nextera mate pair) | 131,111,604,600 | 28X | |
aLibraries built by Génome Québec; sequencing carried out by Génome Québec and in-house at Health Canada.
bSequencing and library construction performed by Génome Québec.