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. Author manuscript; available in PMC: 2019 Sep 25.
Published in final edited form as: Methods Enzymol. 2016 Jun 7;579:191–226. doi: 10.1016/bs.mie.2016.04.013

Figure 1.

Figure 1

Schematic overview of Frealign functions, input and output data. Some of the Frealign commands mentioned in the text are shown in Courier font above the functions or files they relate to. Features and files that are optional and not always used are shown with dashed borders. Frealign is run by a number of shell scripts that prepare input and output data, manage parallel execution and perform iterations when more than one cycle is run.