Antibodies |
|
|
|
Mouse monoclonal anti-phospho-p44/42 MAPK (Erk1/2) (T202/Y204) |
Cell Signaling |
E10; Cat#9106; RRID: AB_331768 |
Rabbit polyclonal anti-ERK 1 |
Santa Cruz |
C-16; Cat#sc-93; RRID: AB_631453 |
Rabbit polyclonal anti-phospho-MEK 1/2 (S217/S221) |
Cell Signaling |
Cat#9121; RRID: AB_331648 |
Rabbit polyclonal anti-MEK 1/2 |
Cell Signaling |
Cat#9122; RRID: AB_823567 |
Mouse monoclonal anti-Cyclin D1 |
Santa Cruz |
A-12; Cat#sc-8396; RRID: AB_627344 |
Rabbit polyclonal anti-GAPDH |
Sigma-Aldrich |
Cat#G9545; RRID: AB_796208 |
Rabbit monoclonal anti-phospho-FAK (Y397) |
Cell Signaling |
D20B1; Cat#8556; RRID: AB_10891442 |
Rabbit monoclonal anti-FAK |
Cell Signaling |
D2R2E; Cat#13009; RRID: AB_2798086 |
Rabbit polyclonal anti-phospho-Paxillin (Y118) |
Cell Signaling |
Cat#2541; RRID: AB_2174466 |
Mouse monoclonal anti-phospho-Paxillin (Y31) |
R&D Systems |
Cat# MAB61641; RRID: AB_10972644 |
Rabbit monoclonal anti-Paxillin |
Abcam |
Y113; ab32084; RRID: AB_779033 |
Mouse monoclonal anti-Talin |
Sigma-Aldrich |
Cat# T3287; RRID: AB_477572 |
Mouse monoclonal anti-β-Actin |
Sigma-Aldrich |
AC-15; Cat#A1978; RRID: AB_476692 |
Rabbit monoclonal anti-RhoA |
Cell Signaling |
67B9; Cat#2117; RRID: AB_10693922 |
Rabbit polyclonal anti-phospho-Myosin Light Chain 2 (T18/S19) |
Cell Signaling |
Cat#3674; RRID: AB_2147464 |
Rabbit monoclonal anti-Myosin Light Chain 2 |
Cell Signaling |
D18E2; Cat#8505; RRID: AB_2728760 |
Mouse monoclonal anti-JNK |
Santa Cruz |
D-2; sc-7345; RRID: AB_675864 |
Mouse monoclonal anti-phospho-JNK |
Santa Cruz |
G-7; sc-6254; RRID: AB_628232 |
Rabbit polyclonal anti-phospho-Merlin (S518) |
Cell Signaling |
Cat#9163; RRID: AB_2149793 |
Rabbit monoclonal anti-Merlin |
Cell Signaling |
D3S3W; Cat#12888; RRID: AB_2650551 |
Mouse monoclonal anti-NF2 |
Santa Cruz |
B-12; Cat# sc-55575; RRID: AB_831599 |
Rabbit polyclonal anti-RFP |
Rockland |
Cat# 600–401-379; RRID: AB_2209751 |
Mouse monoclonal anti-phospho-Histone H3 (S10) |
Cell Signaling |
6G3; Cat#9706; RRID: AB_331748 |
Rabbit polyclonal anti-PAK 1 |
abcam |
Cat#ab154284 |
Goat polyclonal anti-Rabbit IgG, Alexa Fluor 488-conjugated secondary |
ThermoFisher |
Cat#A11034; RRID: AB_2576217 |
Donkey polyclonal anti-Rabbit IgG, Alexa Fluor 647-conjugated secondary |
ThermoFisher |
Cat# A31573; RRID: AB_2536183 |
Donkey polyclonal anti-Mouse IgG, Alexa Fluor 568-conjugated secondary |
ThermoFisher |
Cat# A10037; RRID: AB_2534013 |
Mouse monoclonal anti-ARP3 |
Santa Cruz |
A-1; sc-48344; RRID: AB_626700 |
Mouse monoclonal anti-p34-ARC (ARPC2) |
Santa Cruz |
F-5; sc-515754 |
Mouse monoclonal anti-p41-ARCb (ARPC1B) |
Santa Cruz |
C-3; sc-137125; RRID: AB_2289927 |
Rabbit polyclonal anti-ARPC1A |
Sigma-Aldrich |
HPA004334; RRID: AB_1078215 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
mNeonGreen-Paxillin-22 |
Allele Biotechnology |
http://www.allelebiotech.com/mneongreen-fusions-and-constructs/ |
mNeonGreen-Actin-C-35 |
Allele Biotechnology |
http://www.allelebiotech.com/mneongreen-fusions-and-constructs/ |
Dabrafenib |
Selleckchem |
S2807 |
Trametinib |
Selleckchem |
S2673 |
SB203580 |
Selleckchem |
S1076 |
YAP-TEAD Inhibitor 1 (Peptide 17) |
Selleckchem |
S8164 |
SMIFH2 |
Tocris |
S4826 |
CK666 |
Sigma-Aldrich |
182515 |
CK689 |
Sigma-Aldrich |
182517 |
(−)-Blebbistatin |
Sigma-Aldrich |
B0560 |
ROCK Inhibitor |
Sigma-Aldrich |
Y-27632; SCM075 |
SCH772984 |
ChemieTek |
CT-SCH772 |
Bovine collagen, Type 1 |
Advanced Biomatrix |
5133 |
Collagenase |
Advanced Biomatrix |
5030 |
Poly-L-Lysine |
Sigma-Aldrich |
P8920 |
Fibronectin |
Sigma-Aldrich |
F1141 |
Laminin |
Santa Cruz |
sc-29012 |
|
Critical Commercial Assays |
|
QuikChange Lightning Mutagenesis Kit |
Agilent |
210515 |
Biotin-Avidin Blocking Kit |
Vector Laboratories |
SP-2001, |
Vector M.O.M Peroxidase-based Immunodetection Kit |
Vector Laboratories |
N/A |
ImmPACT DAB Peroxidase Substrate Kit |
Vector Laboratories |
SK-4105 |
ImmPRESS-AP Reagent Anti-Rabbit IgG alkaline phosphatase-based staining kit |
Vector Laboratories |
MP-5401 |
ImmPACT Vector Red alkaline phosphatase substrate |
Vector Laboratories |
SK-5105 |
Click-iT Plus EdU Alexa Fluor Imaging Kits (555 and 488) |
Molecular Probes |
C10638 (555) and C10637 (488) |
Click-iT Plus Edu Alexa Fluor Flow Cytometry Kit |
Molecular Probes |
C10632 |
|
Experimental Models: Cell Lines |
|
Human melanoma: A375 |
ATCC |
Cat# CRL-1619; RRID: CVCL_0132 |
Human melanoma: IGR1 |
DSMZ |
Cat# ACC-236; RRID: CVCL_1303 |
|
Experimental Models: Organisms/Strains |
|
Mouse: Adult female NOD/SCID IL2Rγnull mice |
S. Morrison (Quintana et al., 2012) |
https://www.jax.org/strain/005557; RRID: IMSR_JAX:005557 |
|
Oligonucleotides |
|
Rac1P29S QuikChange primer (forward): CTGATCAGTTACACAACCAATGCATTTTCTGGAGAATATATCCC |
This paper |
N/A |
Rac1P29S QuikChange primer (reverse): GGGATATATTCTCCAGAAAATGCATTGGTTGTGTAACTGATCAG |
This paper |
N/A |
CRISPR editing Rac1P29S to Rac1WT: sgRNA guide sequence 1: 5’- TACACAACCAATGC ATTTTC-3’ |
This paper |
N/A |
CRISPR editing Rac1P29S to Rac1WT: sgRNA guide sequence 2: 5’- ATATTCTCCAGAAAA TGCAT-3’ |
This paper |
N/A |
CRISPR editing Rac1P29S to Rac1WT: ssODN repair sequence 1: AAGATACTTACACAGTAGGGATATATTCTCCAGGAAATGCATTGGTTGTGTAACTGATCAGTAGGCAAGT |
This paper |
N/A |
CRISPR editing Rac1P29S to Rac1WT: ssODN repair sequence 2: AAAACTTGCCTACTGATCAGTTACACAACCAATGCATTTCCTGGAGAATATATCCCTACTGTGTAAGTAT |
This paper |
N/A |
CRISPR knockout of ARPC1B: sgRNA guide sequence: 5’-CTCGTGCACCTTGGTCCATT-3’ |
This paper |
N/A |
|
Recombinant DNA |
|
pcDNA3-GFP-Rac1 (Wild Type) |
Cell Biolabs, inc. |
STA-450, 345001 |
pcDNA3-GFP-Rac1 P29S |
This paper |
N/A |
pLVX-Puro |
Clontech |
632164 |
pLVX-Puro-Rac1WT
|
This paper |
N/A |
pLVX-Puro-RaclP29S
|
This paper |
N/A |
pLVX-shRNA2 |
Clontech |
632179 |
pLVX-CMV100-mNeonGreen-Paxillin-22 |
This paper |
N/A |
pLVX-CMV300-mNeonGreen-Actin-C-35 |
This paper |
N/A |
pcDNA-NF2 (Wild Type) |
D. Pan |
N/A |
pcDNA-NF2-S518A |
D. Pan |
N/A |
pLVX-Puro-NF2 (Wild Type) |
This paper |
N/A |
pLVX-Puro-NF2-S518A |
This paper |
N/A |
dsRed2-P2A-Luc |
S. Morrison (Piskounova et al., 2015) |
N/A |
pSpCas9(BB)-2A-GFP (PX458) |
Ran et al., 2013. |
Addgene ID: 48138, RRID: Addgene_48138 |
|
Software and Algorithms |
|
Ilastik |
https://www.ilastik.org/ |
RRID:SCR_015246 |
Matlab |
The MathWorks, Inc.; https://www.mathworks.com/products/matlab.html
|
RRID:SCR_001622 |
Fiji |
http://fiji.sc/ |
RRID:SCR_002285 |
GraphPad Prism |
https://www.graphpad.com/ |
RRID:SCR_002798 |
U-track Particle Tracking (Version 2.2.1) |
Danuser Lab (Jaqaman et al., 2008) |
http://www.utsouthwestern.edu/labs/danuser/software/ |
Traction Force Analysis (Version 1.1.3) |
Danuser Lab (Han et al., 2015) |
http://www.utsouthwestern.edu/labs/danuser/software/ |
Focal Adhesion Segmentation |
Danuser Lab (Han et al., 2015) |
http://www.utsouthwestern.edu/labs/danuser/software/ |
Immunofluorescence Localization Analysis |
This paper |
N/A |
Lamellipodia Widths Analysis |
This paper |
N/A |
CRISPR Design Tool |
|
http://tools.genome-engineering.org |
CRISPOR |
|
http://crispor.tefor.net |
Benchling |
https://benchling.com/ |
RRID:SCR_013955 |