Table 3.
Primers and cycling conditions used in this study.
Target region/gene | Amplicon size | Primer name | Primer Sequences (5′ → 3′) | Cycling conditions | Reference | |||||
---|---|---|---|---|---|---|---|---|---|---|
16S rRNA gene (bacterial DNA) | 146 bp | q16S-univF | GTGSTGCAYGGYTGTCGTCA | 95 °C | 45x | 95 °C | 53 °C | 72 °C | Maeda et al.90 | |
q16S-univR | ACGTCRTCCMCACCTTCCTC | 10 min | 20 s | 30 s | 20 s | — | ||||
GAPDH (human DNA) | 74 bp | TGCACCACCAACTGCTTAGC | 95 °C | 40x | 95 °C | 65 °C | Vandesompele et al.91 | |||
GGCATGGACTGTGGTCATGAG | 10 min | 10 s | 60 s | — | — | |||||
V3/V4 16S rRNA gene (library preparation) | ~460 bp | s16S_F | TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-InnerTag-CCTACGGGNGGCWGCAG | 95 °C | 25x | 95 °C | 55 °C | 72 °C | 72 °C | Klindworth et al.79 |
s16S_R | GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG- InnerTag-GACTACHVGGGTATCTAATCC | 3 min | 30 s | 30 s | 30 s | 5 min |