TABLE 1.
Carbapenem complexes of OXA enzymes
Carbapenem | Enzyme | Source | Resolution (Å) | Bridge | Tautomer | PDB accession no. |
---|---|---|---|---|---|---|
Imipenem | OXA-13 | Pseudomonas aeruginosa | 1.9 | Noa | Δ2 | 1H5X |
OXA-23b | A. baumannii | 1.5 | No | Δ1R | 6N6U | |
OXA-23c | A. baumannii | 3.3 | No | Δ1R | 6N6X | |
OXA-48 | K. pneumoniae | 1.95 | Noa | Δ2 | 5QB4 | |
OXA-48 | K. pneumoniae | 1.8 | Noa | Δ2 | This work | |
OXA-239d | A. baumannii | 1.87 | Yes | Δ1R | 5WIB | |
Meropenem | OXA-13 | P. aeruginosa | 2.0 | Noa | Δ2 | 1H8Y |
OXA-23 | A. baumannii | 2.14 | Yes | Δ1S | 4JF4 | |
OXA-23b | A. baumannii | 1.5 | No | Δ1R | 6N6V | |
OXA-23c | A. baumannii | 3.5 | No | Δ1R | 6N6Y | |
OXA-48 | K. pneumoniae | 1.75 | Noa | Δ2 | This work | |
Ertapenem | OXA-48 | K. pneumoniae | 2.35 | Noa | Δ2 | This work |
Doripenem | OXA-1 | E. coli | 1.4 | No | Δ1R | 3ISG |
OXA-24/40 | A. baumannii | 2.25 | Yes | Δ2 | 3PAG | |
OXA-24/40 | A. baumannii | 2.1 | Yes | Δ2 | 3PAE | |
OXA-48 | K. pneumoniae | 1.9 | Noa | Δ2 | This work | |
OXA-51e | A. baumannii | 1.77 | Yes | Δ2 | 5L2F | |
OXA-239f | A. baumannii | 1.86 | Yes | Δ2 | 5WI7 |
Both OXA-13 and OXA-48 have what is now defined as a pseudobridge rather than the classical hydrophobic bridge seen in the A. baumannii CHDLs.
Bridge-deficient mutant, low-pH complex.
Bridge-deficient mutant, neutral-pH complex.
The imipenem has no tail (truncated at the sulfur) in one molecule in the asymmetric unit.
The bridge residues are Phe111 and Trp222.
The doripenem is truncated after the pyrrolidine ring in one molecule in the asymmetric unit.